Sonneratia alba (sonneratia_alba)
Imported from atlas release summary for Sonneratia alba.
1203
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1203
Candidate Genes
BAHD
6.79%
C4H
6.14%
POD
4.92%
UGT
4.28%
C3'H/CYP98A
4.15%
4CL
3.96%
7DLGT
3.76%
CYP76
3.35%
Other Families
62.66%
More Families (98)
IFS
102
3.28%
UFGT
91
2.93%
F3H
79
2.54%
NMT
71
2.28%
CODM/T6ODM
66
2.12%
STR
63
2.03%
T3O
60
1.93%
CAD
53
1.7%
LAC
53
1.7%
DWF4/CYP90B1
53
1.7%
F3'H/CYP75B
51
1.64%
SMT1/SMT2/SMT3
49
1.58%
IFR
45
1.45%
G8O/G8H
42
1.35%
BR6OX2/CYP85A2
39
1.25%
HCT
38
1.22%
T16H
35
1.13%
FNS
35
1.13%
GS
34
1.09%
H6H
34
1.09%
SGD
33
1.06%
CSE
33
1.06%
CAS
33
1.06%
TPS
31
1.0%
TAT
30
0.96%
COMT
29
0.93%
CYP71
29
0.93%
GES
27
0.87%
RAS
26
0.84%
TRI/TRII
24
0.77%
ANR
24
0.77%
CCR
24
0.77%
16OMT
23
0.74%
7DLH
21
0.68%
IO
21
0.68%
PMT
21
0.68%
PAL
21
0.68%
8HGO
18
0.58%
PYKS
17
0.55%
ANS/LDOX
16
0.51%
F5H/CYP84A
16
0.51%
BR6OX1/CYP85A1
15
0.48%
SLS
14
0.45%
COR
14
0.45%
LAMT
14
0.45%
CHS
14
0.45%
NCS
13
0.42%
DFR
13
0.42%
F3'5'H/CYP75A
13
0.42%
ROT3/CYP90C1
13
0.42%
CYP90D1
11
0.35%
CPD/CYP90A1
11
0.35%
MPO
9
0.29%
CPR
9
0.29%
FPPS
9
0.29%
SMO1/SMO2
8
0.26%
SQE
8
0.26%
AACT
8
0.26%
MVD
8
0.26%
CNMT
7
0.23%
ADC
7
0.23%
HMGR
7
0.23%
MVK
7
0.23%
ISY
6
0.19%
CYP719
6
0.19%
CHI
6
0.19%
CCoAOMT
6
0.19%
HPPR
6
0.19%
SQS/FDFT1
6
0.19%
GGPPS
6
0.19%
CYP80B1
5
0.16%
DET2
4
0.13%
IDI
4
0.13%
TDC
3
0.1%
BBE
3
0.1%
6OMT_4OMT_SOMT
3
0.1%
TYDC_DDC
3
0.1%
CYP51G1
3
0.1%
DWF7
3
0.1%
HMGS
3
0.1%
DXS
3
0.1%
HDR/IspH
3
0.1%
CYP80F1
2
0.06%
FK
2
0.06%
DWF5
2
0.06%
MDS/IspF
2
0.06%
DXR
2
0.06%
MCT/IspD
2
0.06%
CMK/IspE
2
0.06%
GPPS
2
0.06%
ODC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FLS
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
DWF1
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 355 | 19 | BAHD (145) | View species results |
| Phenylpropanoid pathway | 287 | 12 | POD (128) | View species results |
| Alkaloid pathway | 254 | 20 | 7DLGT (40) | View species results |
| Flavonoid pathway | 146 | 10 | UFGT (76) | View species results |
| Rosmarinic acid pathway | 82 | 7 | 4CL (25) | View species results |
| Steroid pathway | 79 | 11 | SMT1/SMT2/SMT3 (29) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 986 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 275 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| sonneratia_alba_SA_00039 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_00041 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_00069 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_00072 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_00090 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_00101 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_02530 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_03720 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_05929 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_06193 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_06194 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_06196 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_06272 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_06325 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_06555 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_07387 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_08905 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_10822 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_10826 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_11315 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_16340 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_17724 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_19042 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_19043 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_21297 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_21833 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_22724 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_24489 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_26766 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_27093 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_28060 | Alkaloid | SGD | low | borderline |
| sonneratia_alba_SA_28590 | Alkaloid | SGD | medium | pass |
| sonneratia_alba_SA_28592 | Alkaloid | SGD | low | borderline |