PlantSME Plant secondary metabolism enzyme database

Sonneratia alba (sonneratia_alba)

Imported from atlas release summary for Sonneratia alba.

1650
Candidate Protein Records
1203
Pathway-Level Records
3109
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.51% Phenylpropanoid pathway 23.86% Alkaloid pathway 21.11% Flavonoid pathway 12.14% Rosmarinic acid pathway 6.82% Steroid pathway 6.57%
Family Distribution
BAHD 6.79% C4H 6.14% POD 4.92% UGT 4.28% C3'H/CYP98A 4.15% 4CL 3.96% 7DLGT 3.76% CYP76 3.35%
Other Families 62.66%
More Families (98)
IFS 102 3.28% UFGT 91 2.93% F3H 79 2.54% NMT 71 2.28% CODM/T6ODM 66 2.12% STR 63 2.03% T3O 60 1.93% CAD 53 1.7% LAC 53 1.7% DWF4/CYP90B1 53 1.7% F3'H/CYP75B 51 1.64% SMT1/SMT2/SMT3 49 1.58% IFR 45 1.45% G8O/G8H 42 1.35% BR6OX2/CYP85A2 39 1.25% HCT 38 1.22% T16H 35 1.13% FNS 35 1.13% GS 34 1.09% H6H 34 1.09% SGD 33 1.06% CSE 33 1.06% CAS 33 1.06% TPS 31 1.0% TAT 30 0.96% COMT 29 0.93% CYP71 29 0.93% GES 27 0.87% RAS 26 0.84% TRI/TRII 24 0.77% ANR 24 0.77% CCR 24 0.77% 16OMT 23 0.74% 7DLH 21 0.68% IO 21 0.68% PMT 21 0.68% PAL 21 0.68% 8HGO 18 0.58% PYKS 17 0.55% ANS/LDOX 16 0.51% F5H/CYP84A 16 0.51% BR6OX1/CYP85A1 15 0.48% SLS 14 0.45% COR 14 0.45% LAMT 14 0.45% CHS 14 0.45% NCS 13 0.42% DFR 13 0.42% F3'5'H/CYP75A 13 0.42% ROT3/CYP90C1 13 0.42% CYP90D1 11 0.35% CPD/CYP90A1 11 0.35% MPO 9 0.29% CPR 9 0.29% FPPS 9 0.29% SMO1/SMO2 8 0.26% SQE 8 0.26% AACT 8 0.26% MVD 8 0.26% CNMT 7 0.23% ADC 7 0.23% HMGR 7 0.23% MVK 7 0.23% ISY 6 0.19% CYP719 6 0.19% CHI 6 0.19% CCoAOMT 6 0.19% HPPR 6 0.19% SQS/FDFT1 6 0.19% GGPPS 6 0.19% CYP80B1 5 0.16% DET2 4 0.13% IDI 4 0.13% TDC 3 0.1% BBE 3 0.1% 6OMT_4OMT_SOMT 3 0.1% TYDC_DDC 3 0.1% CYP51G1 3 0.1% DWF7 3 0.1% HMGS 3 0.1% DXS 3 0.1% HDR/IspH 3 0.1% CYP80F1 2 0.06% FK 2 0.06% DWF5 2 0.06% MDS/IspF 2 0.06% DXR 2 0.06% MCT/IspD 2 0.06% CMK/IspE 2 0.06% GPPS 2 0.06% ODC 1 0.03% XMT_MXMT_DXMT 1 0.03% FLS 1 0.03% CPI1 1 0.03% HYD1 1 0.03% DWF1 1 0.03% HDS/IspG 1 0.03% PMK 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 355 19 BAHD (145) View species results
Phenylpropanoid pathway 287 12 POD (128) View species results
Alkaloid pathway 254 20 7DLGT (40) View species results
Flavonoid pathway 146 10 UFGT (76) View species results
Rosmarinic acid pathway 82 7 4CL (25) View species results
Steroid pathway 79 11 SMT1/SMT2/SMT3 (29) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 986 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 275 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
sonneratia_alba_SA_26571 Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
sonneratia_alba_SA_26582 Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH
sonneratia_alba_SA_26602 Terpenoid UGT medium pass UGT__00082__sp_Q9C9B0_U89B1_ARATH
sonneratia_alba_SA_27146 Terpenoid UGT low borderline UGT__00082__sp_Q9C9B0_U89B1_ARATH
sonneratia_alba_SA_27417 Terpenoid UGT low borderline UGT__00024__sp_B3VI56_U91D2_STERE
sonneratia_alba_SA_27565 Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
sonneratia_alba_SA_27616 Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
sonneratia_alba_SA_28304 Terpenoid UGT medium pass UGT__00001__sp_A0A067YB04_UGT1_PUEML
sonneratia_alba_SA_28762 Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA