PlantSME Plant secondary metabolism enzyme database

Spirodela intermedia (spirodela_intermedia)

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Imported from atlas release summary for Spirodela intermedia.

748
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.74% Phenylpropanoid pathway 24.6% Alkaloid pathway 19.39% Flavonoid pathway 12.7% Rosmarinic acid pathway 8.82% Steroid pathway 5.75%
Family Distribution
C3'H/CYP98A 6.63% BAHD 6.48% C4H 6.0% POD 5.15% 4CL 4.3% CYP76 4.03% IFS 3.98% T3O 3.77%
Other Families 59.66%
More Families (96)
UGT 60 3.18% UFGT 59 3.13% 7DLGT 58 3.08% BR6OX2/CYP85A2 52 2.76% NMT 47 2.49% F3'H/CYP75B 43 2.28% STR 42 2.23% DWF4/CYP90B1 42 2.23% CSE 36 1.91% F3H 33 1.75% CAD 31 1.65% SMT1/SMT2/SMT3 26 1.38% TRI/TRII 25 1.33% G8O/G8H 24 1.27% HCT 24 1.27% PYKS 23 1.22% IFR 22 1.17% CYP71 22 1.17% CODM/T6ODM 21 1.11% GS 20 1.06% ANR 19 1.01% SLS 17 0.9% TYDC_DDC 16 0.85% CYP90D1 16 0.85% CCR 15 0.8% CAS 15 0.8% 8HGO 14 0.74% RAS 14 0.74% TPS 14 0.74% LAC 12 0.64% H6H 11 0.58% GES 10 0.53% SGD 10 0.53% FNS 10 0.53% CNMT 9 0.48% PMT 9 0.48% F3'5'H/CYP75A 9 0.48% PAL 9 0.48% COMT 9 0.48% CPD/CYP90A1 9 0.48% 7DLH 8 0.42% T16H 7 0.37% NCS 7 0.37% F5H/CYP84A 7 0.37% 16OMT 6 0.32% CYP719 6 0.32% TAT 6 0.32% DET2 6 0.32% IO 5 0.27% DFR 5 0.27% CPR 5 0.27% BR6OX1/CYP85A1 5 0.27% TDC 4 0.21% SQS/FDFT1 4 0.21% CYP51G1 4 0.21% AACT 4 0.21% COR 3 0.16% CYP80B1 3 0.16% LAMT 3 0.16% CHS 3 0.16% CHI 3 0.16% SMO1/SMO2 3 0.16% HYD1 3 0.16% HDR/IspH 3 0.16% GGPPS 3 0.16% FPPS 3 0.16% DXS 3 0.16% MVK 3 0.16% MVD 3 0.16% BBE 2 0.11% ADC 2 0.11% ANS/LDOX 2 0.11% CCoAOMT 2 0.11% HPPR 2 0.11% ROT3/CYP90C1 2 0.11% DWF1 2 0.11% DWF7 2 0.11% CPI1 2 0.11% DWF5 2 0.11% MCT/IspD 2 0.11% PMK 2 0.11% ISY 1 0.05% CYP80F1 1 0.05% 6OMT_4OMT_SOMT 1 0.05% MPO 1 0.05% XMT_MXMT_DXMT 1 0.05% FLS 1 0.05% SQE 1 0.05% FK 1 0.05% HDS/IspG 1 0.05% HMGR 1 0.05% CMK/IspE 1 0.05% HMGS 1 0.05% IDI 1 0.05% DXR 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 215 19 BAHD (91) View species results
Phenylpropanoid pathway 184 11 POD (97) View species results
Alkaloid pathway 145 21 NMT (27) View species results
Flavonoid pathway 95 10 UFGT (56) View species results
Rosmarinic acid pathway 66 7 C4H (29) View species results
Steroid pathway 43 11 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 160 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
spirodela_intermedia_CAA7389698.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
spirodela_intermedia_CAA7389823.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
spirodela_intermedia_CAA7391711.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
spirodela_intermedia_CAA7391712.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
spirodela_intermedia_CAA7392689.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
spirodela_intermedia_CAA7392753.1 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
spirodela_intermedia_CAA7398102.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
spirodela_intermedia_CAA7401729.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
spirodela_intermedia_CAA7401730.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
spirodela_intermedia_CAA7401970.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
spirodela_intermedia_CAA7406392.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
spirodela_intermedia_CAA7408779.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH