Spirodela intermedia (spirodela_intermedia)
/
Imported from atlas release summary for Spirodela intermedia.
748
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
748
Candidate Genes
C3'H/CYP98A
6.63%
BAHD
6.48%
C4H
6.0%
POD
5.15%
4CL
4.3%
CYP76
4.03%
IFS
3.98%
T3O
3.77%
Other Families
59.66%
More Families (96)
UGT
60
3.18%
UFGT
59
3.13%
7DLGT
58
3.08%
BR6OX2/CYP85A2
52
2.76%
NMT
47
2.49%
F3'H/CYP75B
43
2.28%
STR
42
2.23%
DWF4/CYP90B1
42
2.23%
CSE
36
1.91%
F3H
33
1.75%
CAD
31
1.65%
SMT1/SMT2/SMT3
26
1.38%
TRI/TRII
25
1.33%
G8O/G8H
24
1.27%
HCT
24
1.27%
PYKS
23
1.22%
IFR
22
1.17%
CYP71
22
1.17%
CODM/T6ODM
21
1.11%
GS
20
1.06%
ANR
19
1.01%
SLS
17
0.9%
TYDC_DDC
16
0.85%
CYP90D1
16
0.85%
CCR
15
0.8%
CAS
15
0.8%
8HGO
14
0.74%
RAS
14
0.74%
TPS
14
0.74%
LAC
12
0.64%
H6H
11
0.58%
GES
10
0.53%
SGD
10
0.53%
FNS
10
0.53%
CNMT
9
0.48%
PMT
9
0.48%
F3'5'H/CYP75A
9
0.48%
PAL
9
0.48%
COMT
9
0.48%
CPD/CYP90A1
9
0.48%
7DLH
8
0.42%
T16H
7
0.37%
NCS
7
0.37%
F5H/CYP84A
7
0.37%
16OMT
6
0.32%
CYP719
6
0.32%
TAT
6
0.32%
DET2
6
0.32%
IO
5
0.27%
DFR
5
0.27%
CPR
5
0.27%
BR6OX1/CYP85A1
5
0.27%
TDC
4
0.21%
SQS/FDFT1
4
0.21%
CYP51G1
4
0.21%
AACT
4
0.21%
COR
3
0.16%
CYP80B1
3
0.16%
LAMT
3
0.16%
CHS
3
0.16%
CHI
3
0.16%
SMO1/SMO2
3
0.16%
HYD1
3
0.16%
HDR/IspH
3
0.16%
GGPPS
3
0.16%
FPPS
3
0.16%
DXS
3
0.16%
MVK
3
0.16%
MVD
3
0.16%
BBE
2
0.11%
ADC
2
0.11%
ANS/LDOX
2
0.11%
CCoAOMT
2
0.11%
HPPR
2
0.11%
ROT3/CYP90C1
2
0.11%
DWF1
2
0.11%
DWF7
2
0.11%
CPI1
2
0.11%
DWF5
2
0.11%
MCT/IspD
2
0.11%
PMK
2
0.11%
ISY
1
0.05%
CYP80F1
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
MPO
1
0.05%
XMT_MXMT_DXMT
1
0.05%
FLS
1
0.05%
SQE
1
0.05%
FK
1
0.05%
HDS/IspG
1
0.05%
HMGR
1
0.05%
CMK/IspE
1
0.05%
HMGS
1
0.05%
IDI
1
0.05%
DXR
1
0.05%
MDS/IspF
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 215 | 19 | BAHD (91) | View species results |
| Phenylpropanoid pathway | 184 | 11 | POD (97) | View species results |
| Alkaloid pathway | 145 | 21 | NMT (27) | View species results |
| Flavonoid pathway | 95 | 10 | UFGT (56) | View species results |
| Rosmarinic acid pathway | 66 | 7 | C4H (29) | View species results |
| Steroid pathway | 43 | 11 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 742 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 160 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| spirodela_intermedia_CAA7404805.1 | Alkaloid | 7DLGT | high | pass |
| spirodela_intermedia_CAA7406492.1 | Alkaloid | 7DLGT | medium | pass |
| spirodela_intermedia_CAA7407358.1 | Alkaloid | 7DLGT | medium | pass |
| spirodela_intermedia_CAA7407363.1 | Alkaloid | 7DLGT | medium | pass |
| spirodela_intermedia_CAA7407364.1 | Alkaloid | 7DLGT | medium | pass |
| spirodela_intermedia_CAA7407365.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7407503.1 | Alkaloid | 7DLGT | medium | pass |
| spirodela_intermedia_CAA7407645.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7407647.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7407766.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7409382.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7409631.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7409632.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7409634.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7410603.1 | Alkaloid | 7DLGT | low | borderline |
| spirodela_intermedia_CAA7399115.1 | Alkaloid | 7DLH | medium | pass |
| spirodela_intermedia_CAA7399692.1 | Alkaloid | 7DLH | medium | borderline |
| spirodela_intermedia_CAA7400216.1 | Alkaloid | 7DLH | medium | borderline |
| spirodela_intermedia_CAA7400922.1 | Alkaloid | 7DLH | low | borderline |
| spirodela_intermedia_CAA7403368.1 | Alkaloid | 7DLH | medium | borderline |
| spirodela_intermedia_CAA7403370.1 | Alkaloid | 7DLH | medium | borderline |
| spirodela_intermedia_CAA7408437.1 | Alkaloid | 7DLH | medium | borderline |
| spirodela_intermedia_CAA7408443.1 | Alkaloid | 7DLH | medium | borderline |
| spirodela_intermedia_CAA7390684.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7391272.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7391950.1 | Alkaloid | 8HGO | low | borderline |
| spirodela_intermedia_CAA7396682.1 | Alkaloid | 8HGO | medium | pass |
| spirodela_intermedia_CAA7396686.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7396687.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7396689.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7396691.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7396692.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7396694.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7398985.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7400639.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7401638.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7410538.1 | Alkaloid | 8HGO | medium | borderline |
| spirodela_intermedia_CAA7399624.1 | Alkaloid | ADC | medium | pass |
| spirodela_intermedia_CAA7402331.1 | Alkaloid | ADC | low | borderline |
| spirodela_intermedia_CAA7394115.1 | Alkaloid | BBE | medium | borderline |
| spirodela_intermedia_CAA7394116.1 | Alkaloid | BBE | medium | borderline |
| spirodela_intermedia_CAA7393831.1 | Alkaloid | CNMT | low | borderline |
| spirodela_intermedia_CAA7394882.1 | Alkaloid | CNMT | low | borderline |
| spirodela_intermedia_CAA7395455.1 | Alkaloid | CNMT | low | borderline |
| spirodela_intermedia_CAA7395514.1 | Alkaloid | CNMT | medium | pass |
| spirodela_intermedia_CAA7402166.1 | Alkaloid | CNMT | low | borderline |
| spirodela_intermedia_CAA7402434.1 | Alkaloid | CNMT | low | borderline |
| spirodela_intermedia_CAA7402947.1 | Alkaloid | CNMT | medium | borderline |
| spirodela_intermedia_CAA7403472.1 | Alkaloid | CNMT | low | borderline |
| spirodela_intermedia_CAA7408820.1 | Alkaloid | CNMT | low | borderline |