Spirodela intermedia (spirodela_intermedia)
/
Imported from atlas release summary for Spirodela intermedia.
748
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
748
Candidate Genes
C3'H/CYP98A
6.63%
BAHD
6.48%
C4H
6.0%
POD
5.15%
4CL
4.3%
CYP76
4.03%
IFS
3.98%
T3O
3.77%
Other Families
59.66%
More Families (96)
UGT
60
3.18%
UFGT
59
3.13%
7DLGT
58
3.08%
BR6OX2/CYP85A2
52
2.76%
NMT
47
2.49%
F3'H/CYP75B
43
2.28%
STR
42
2.23%
DWF4/CYP90B1
42
2.23%
CSE
36
1.91%
F3H
33
1.75%
CAD
31
1.65%
SMT1/SMT2/SMT3
26
1.38%
TRI/TRII
25
1.33%
G8O/G8H
24
1.27%
HCT
24
1.27%
PYKS
23
1.22%
IFR
22
1.17%
CYP71
22
1.17%
CODM/T6ODM
21
1.11%
GS
20
1.06%
ANR
19
1.01%
SLS
17
0.9%
TYDC_DDC
16
0.85%
CYP90D1
16
0.85%
CCR
15
0.8%
CAS
15
0.8%
8HGO
14
0.74%
RAS
14
0.74%
TPS
14
0.74%
LAC
12
0.64%
H6H
11
0.58%
GES
10
0.53%
SGD
10
0.53%
FNS
10
0.53%
CNMT
9
0.48%
PMT
9
0.48%
F3'5'H/CYP75A
9
0.48%
PAL
9
0.48%
COMT
9
0.48%
CPD/CYP90A1
9
0.48%
7DLH
8
0.42%
T16H
7
0.37%
NCS
7
0.37%
F5H/CYP84A
7
0.37%
16OMT
6
0.32%
CYP719
6
0.32%
TAT
6
0.32%
DET2
6
0.32%
IO
5
0.27%
DFR
5
0.27%
CPR
5
0.27%
BR6OX1/CYP85A1
5
0.27%
TDC
4
0.21%
SQS/FDFT1
4
0.21%
CYP51G1
4
0.21%
AACT
4
0.21%
COR
3
0.16%
CYP80B1
3
0.16%
LAMT
3
0.16%
CHS
3
0.16%
CHI
3
0.16%
SMO1/SMO2
3
0.16%
HYD1
3
0.16%
HDR/IspH
3
0.16%
GGPPS
3
0.16%
FPPS
3
0.16%
DXS
3
0.16%
MVK
3
0.16%
MVD
3
0.16%
BBE
2
0.11%
ADC
2
0.11%
ANS/LDOX
2
0.11%
CCoAOMT
2
0.11%
HPPR
2
0.11%
ROT3/CYP90C1
2
0.11%
DWF1
2
0.11%
DWF7
2
0.11%
CPI1
2
0.11%
DWF5
2
0.11%
MCT/IspD
2
0.11%
PMK
2
0.11%
ISY
1
0.05%
CYP80F1
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
MPO
1
0.05%
XMT_MXMT_DXMT
1
0.05%
FLS
1
0.05%
SQE
1
0.05%
FK
1
0.05%
HDS/IspG
1
0.05%
HMGR
1
0.05%
CMK/IspE
1
0.05%
HMGS
1
0.05%
IDI
1
0.05%
DXR
1
0.05%
MDS/IspF
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 215 | 19 | BAHD (91) | View species results |
| Phenylpropanoid pathway | 184 | 11 | POD (97) | View species results |
| Alkaloid pathway | 145 | 21 | NMT (27) | View species results |
| Flavonoid pathway | 95 | 10 | UFGT (56) | View species results |
| Rosmarinic acid pathway | 66 | 7 | C4H (29) | View species results |
| Steroid pathway | 43 | 11 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 742 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 160 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| spirodela_intermedia_CAA7405144.1 | Terpenoid | BAHD | medium | pass | BAHD__00040__sp_Q41745_LPAT_MAIZE |
| spirodela_intermedia_CAA7405492.1 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| spirodela_intermedia_CAA7405768.1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| spirodela_intermedia_CAA7405781.1 | Terpenoid | BAHD | medium | pass | BAHD__00084__sp_Q9M115_ZDH16_ARATH |
| spirodela_intermedia_CAA7405814.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| spirodela_intermedia_CAA7405911.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| spirodela_intermedia_CAA7406050.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| spirodela_intermedia_CAA7406066.1 | Terpenoid | BAHD | medium | pass | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| spirodela_intermedia_CAA7406316.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| spirodela_intermedia_CAA7406454.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| spirodela_intermedia_CAA7406665.1 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| spirodela_intermedia_CAA7406934.1 | Terpenoid | BAHD | medium | pass | BAHD__00097__sp_Q9ZV87_NAPES_ARATH |
| spirodela_intermedia_CAA7407499.1 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| spirodela_intermedia_CAA7407580.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| spirodela_intermedia_CAA7407581.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| spirodela_intermedia_CAA7408098.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| spirodela_intermedia_CAA7408104.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| spirodela_intermedia_CAA7408448.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| spirodela_intermedia_CAA7408895.1 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| spirodela_intermedia_CAA7409000.1 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| spirodela_intermedia_CAA7409025.1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| spirodela_intermedia_CAA7409393.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| spirodela_intermedia_CAA7410775.1 | Terpenoid | BAHD | medium | pass | BAHD__00051__sp_Q7XA86_ZDH11_ARATH |
| spirodela_intermedia_CAA7410837.1 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| spirodela_intermedia_CAA7410869.1 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| spirodela_intermedia_CAA7411077.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| spirodela_intermedia_CAA7398575.1 | Terpenoid | CMK/IspE | high | pass | CMK_IspE__00001__sp_O81014_ISPE_ARATH |
| spirodela_intermedia_CAA7389530.1 | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7390793.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7391366.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7391792.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7394307.1 | Terpenoid | CYP71 | low | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7396003.1 | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7397000.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7397010.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7399411.1 | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7400557.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7403146.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7403502.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7404862.1 | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7404863.1 | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7404879.1 | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7404885.1 | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7405377.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7405378.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7405763.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7406772.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7408357.1 | Terpenoid | CYP71 | low | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| spirodela_intermedia_CAA7408809.1 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| spirodela_intermedia_CAA7387790.1 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |