PlantSME Plant secondary metabolism enzyme database

Striga hermonthica (striga_hermonthica)

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Imported from atlas release summary for Striga hermonthica.

1214
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.05% Phenylpropanoid pathway 21.25% Alkaloid pathway 19.6% Flavonoid pathway 12.44% Rosmarinic acid pathway 9.8% Steroid pathway 5.85%
Family Distribution
C4H 6.19% BAHD 5.99% C3'H/CYP98A 5.44% POD 4.34% UGT 4.27% CYP76 4.09% 4CL 3.82% 7DLGT 3.79%
Other Families 62.08%
More Families (95)
UFGT 109 3.75% T3O 94 3.23% IFS 92 3.17% NMT 71 2.44% DWF4/CYP90B1 69 2.37% F3'H/CYP75B 66 2.27% F3H 65 2.24% CAD 61 2.1% STR 55 1.89% SMT1/SMT2/SMT3 54 1.86% BR6OX2/CYP85A2 48 1.65% CODM/T6ODM 45 1.55% GS 38 1.31% CYP71 36 1.24% IFR 31 1.07% GES 29 1.0% IO 29 1.0% TPS 29 1.0% H6H 26 0.89% BBE 26 0.89% LAC 26 0.89% CAS 26 0.89% TRI/TRII 24 0.83% RAS 24 0.83% F3'5'H/CYP75A 22 0.76% CYP90D1 22 0.76% T16H 21 0.72% ANR 21 0.72% CSE 21 0.72% CCR 21 0.72% PYKS 19 0.65% DFR 19 0.65% HCT 18 0.62% TAT 17 0.58% SLS 16 0.55% PMT 16 0.55% COMT 16 0.55% CYP51G1 16 0.55% F5H/CYP84A 15 0.52% 8HGO 14 0.48% 7DLH 14 0.48% CPD/CYP90A1 14 0.48% GGPPS 14 0.48% LAMT 13 0.45% SGD 13 0.45% FNS 12 0.41% CCoAOMT 12 0.41% 16OMT 11 0.38% NCS 11 0.38% G8O/G8H 11 0.38% PMK 11 0.38% CNMT 10 0.34% ANS/LDOX 9 0.31% PAL 9 0.31% AACT 9 0.31% FPPS 9 0.31% MPO 8 0.28% CYP80B1 8 0.28% CPR 8 0.28% SMO1/SMO2 7 0.24% ROT3/CYP90C1 7 0.24% HMGR 7 0.24% DXR 7 0.24% DXS 7 0.24% MVK 7 0.24% ISY 6 0.21% CHS 6 0.21% CYP719 5 0.17% TDC 5 0.17% BR6OX1/CYP85A1 5 0.17% COR 4 0.14% HPPR 4 0.14% SQS/FDFT1 4 0.14% SQE 4 0.14% MVD 4 0.14% FLS 3 0.1% CHI 3 0.1% DET2 3 0.1% HDR/IspH 3 0.1% MCT/IspD 3 0.1% IDI 3 0.1% MDS/IspF 3 0.1% TYDC_DDC 2 0.07% CYP80F1 2 0.07% CPI1 2 0.07% DWF7 2 0.07% HYD1 2 0.07% CMK/IspE 2 0.07% HMGS 2 0.07% HDS/IspG 2 0.07% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% DWF1 1 0.03% DWF5 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 377 19 BAHD (123) View species results
Phenylpropanoid pathway 258 11 POD (117) View species results
Alkaloid pathway 238 22 7DLGT (47) View species results
Flavonoid pathway 151 10 UFGT (98) View species results
Rosmarinic acid pathway 119 7 C4H (60) View species results
Steroid pathway 71 11 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1069 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 216 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
striga_hermonthica_CAA0831996.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
striga_hermonthica_CAA0832599.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
striga_hermonthica_CAA0832680.1 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
striga_hermonthica_CAA0834372.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
striga_hermonthica_CAA0834745.1 Rosmarinic Acid 4CL low borderline 4CL__00008__sp_Q42982_4CL2_ORYSJ
striga_hermonthica_CAA0834845.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
striga_hermonthica_CAA0837055.1 Rosmarinic Acid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
striga_hermonthica_CAA0837313.1 Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
striga_hermonthica_CAA0837315.1 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
striga_hermonthica_CAA0838656.1 Rosmarinic Acid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
striga_hermonthica_CAA0842001.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY