PlantSME Plant secondary metabolism enzyme database

Striga hermonthica (striga_hermonthica)

/

Imported from atlas release summary for Striga hermonthica.

1214
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.05% Phenylpropanoid pathway 21.25% Alkaloid pathway 19.6% Flavonoid pathway 12.44% Rosmarinic acid pathway 9.8% Steroid pathway 5.85%
Family Distribution
C4H 6.19% BAHD 5.99% C3'H/CYP98A 5.44% POD 4.34% UGT 4.27% CYP76 4.09% 4CL 3.82% 7DLGT 3.79%
Other Families 62.08%
More Families (95)
UFGT 109 3.75% T3O 94 3.23% IFS 92 3.17% NMT 71 2.44% DWF4/CYP90B1 69 2.37% F3'H/CYP75B 66 2.27% F3H 65 2.24% CAD 61 2.1% STR 55 1.89% SMT1/SMT2/SMT3 54 1.86% BR6OX2/CYP85A2 48 1.65% CODM/T6ODM 45 1.55% GS 38 1.31% CYP71 36 1.24% IFR 31 1.07% GES 29 1.0% IO 29 1.0% TPS 29 1.0% H6H 26 0.89% BBE 26 0.89% LAC 26 0.89% CAS 26 0.89% TRI/TRII 24 0.83% RAS 24 0.83% F3'5'H/CYP75A 22 0.76% CYP90D1 22 0.76% T16H 21 0.72% ANR 21 0.72% CSE 21 0.72% CCR 21 0.72% PYKS 19 0.65% DFR 19 0.65% HCT 18 0.62% TAT 17 0.58% SLS 16 0.55% PMT 16 0.55% COMT 16 0.55% CYP51G1 16 0.55% F5H/CYP84A 15 0.52% 8HGO 14 0.48% 7DLH 14 0.48% CPD/CYP90A1 14 0.48% GGPPS 14 0.48% LAMT 13 0.45% SGD 13 0.45% FNS 12 0.41% CCoAOMT 12 0.41% 16OMT 11 0.38% NCS 11 0.38% G8O/G8H 11 0.38% PMK 11 0.38% CNMT 10 0.34% ANS/LDOX 9 0.31% PAL 9 0.31% AACT 9 0.31% FPPS 9 0.31% MPO 8 0.28% CYP80B1 8 0.28% CPR 8 0.28% SMO1/SMO2 7 0.24% ROT3/CYP90C1 7 0.24% HMGR 7 0.24% DXR 7 0.24% DXS 7 0.24% MVK 7 0.24% ISY 6 0.21% CHS 6 0.21% CYP719 5 0.17% TDC 5 0.17% BR6OX1/CYP85A1 5 0.17% COR 4 0.14% HPPR 4 0.14% SQS/FDFT1 4 0.14% SQE 4 0.14% MVD 4 0.14% FLS 3 0.1% CHI 3 0.1% DET2 3 0.1% HDR/IspH 3 0.1% MCT/IspD 3 0.1% IDI 3 0.1% MDS/IspF 3 0.1% TYDC_DDC 2 0.07% CYP80F1 2 0.07% CPI1 2 0.07% DWF7 2 0.07% HYD1 2 0.07% CMK/IspE 2 0.07% HMGS 2 0.07% HDS/IspG 2 0.07% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% DWF1 1 0.03% DWF5 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 377 19 BAHD (123) View species results
Phenylpropanoid pathway 258 11 POD (117) View species results
Alkaloid pathway 238 22 7DLGT (47) View species results
Flavonoid pathway 151 10 UFGT (98) View species results
Rosmarinic acid pathway 119 7 C4H (60) View species results
Steroid pathway 71 11 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1069 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 216 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
Reset
Gene Pathway Family Confidence Status Best Target
striga_hermonthica_CAA0836360.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
striga_hermonthica_CAA0836361.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
striga_hermonthica_CAA0837027.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
striga_hermonthica_CAA0838086.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
striga_hermonthica_CAA0838107.1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
striga_hermonthica_CAA0838226.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
striga_hermonthica_CAA0839532.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
striga_hermonthica_CAA0840385.1 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
striga_hermonthica_CAA0841003.1 Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
striga_hermonthica_CAA0841845.1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
striga_hermonthica_CAA0842646.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM