PlantSME Plant secondary metabolism enzyme database

Syringa oblata (syringa_oblata)

Imported from atlas release summary for Syringa oblata.

2190
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.28% Alkaloid pathway 23.56% Phenylpropanoid pathway 17.76% Flavonoid pathway 13.42% Steroid pathway 6.99% Rosmarinic acid pathway 5.98%
Family Distribution
C4H 7.1% BAHD 5.84% UGT 4.47% C3'H/CYP98A 4.36% 7DLGT 4.25% UFGT 4.16% 4CL 3.62% POD 3.44%
Other Families 62.76%
More Families (97)
CYP76 169 3.05% IFS 135 2.43% F3H 134 2.41% CAD 125 2.25% F3'H/CYP75B 124 2.23% NMT 123 2.22% T3O 122 2.2% TPS 115 2.07% GES 103 1.86% SMT1/SMT2/SMT3 98 1.77% CAS 95 1.71% CYP71 94 1.69% STR 88 1.59% CODM/T6ODM 87 1.57% G8O/G8H 82 1.48% DWF4/CYP90B1 70 1.26% BR6OX2/CYP85A2 69 1.24% H6H 67 1.21% SGD 64 1.15% LAC 63 1.14% FNS 56 1.01% CSE 56 1.01% F5H/CYP84A 50 0.9% 7DLH 49 0.88% HCT 49 0.88% T16H 48 0.86% BBE 48 0.86% PYKS 46 0.83% TRI/TRII 45 0.81% GS 45 0.81% IFR 45 0.81% CYP90D1 45 0.81% RAS 44 0.79% IO 41 0.74% F3'5'H/CYP75A 37 0.67% TAT 36 0.65% CPD/CYP90A1 33 0.59% ANR 32 0.58% COMT 32 0.58% PMT 30 0.54% 16OMT 26 0.47% GGPPS 26 0.47% NCS 25 0.45% CCR 25 0.45% FPPS 25 0.45% SLS 23 0.41% CPR 23 0.41% AACT 22 0.4% ANS/LDOX 21 0.38% LAMT 20 0.36% COR 20 0.36% CYP80B1 18 0.32% PAL 18 0.32% SQS/FDFT1 17 0.31% 8HGO 16 0.29% DFR 16 0.29% HMGR 15 0.27% DXS 14 0.25% SQE 13 0.23% BR6OX1/CYP85A1 12 0.22% CYP51G1 12 0.22% ISY 11 0.2% ROT3/CYP90C1 11 0.2% CHS 10 0.18% SMO1/SMO2 10 0.18% HDR/IspH 9 0.16% CNMT 8 0.14% CCoAOMT 8 0.14% HPPR 8 0.14% MVK 8 0.14% HMGS 8 0.14% MPO 7 0.13% XMT_MXMT_DXMT 6 0.11% DXR 6 0.11% MVD 6 0.11% CYP719 5 0.09% TYDC_DDC 5 0.09% FLS 5 0.09% HDS/IspG 5 0.09% ADC 4 0.07% CHI 4 0.07% DET2 4 0.07% IDI 4 0.07% PMK 4 0.07% CYP80F1 3 0.05% TDC 3 0.05% HYD1 3 0.05% CMK/IspE 3 0.05% DWF5 2 0.04% DWF7 2 0.04% CPI1 2 0.04% MCT/IspD 2 0.04% GPPS 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% DWF1 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 707 20 BAHD (220) View species results
Alkaloid pathway 516 23 7DLGT (109) View species results
Phenylpropanoid pathway 389 12 POD (153) View species results
Flavonoid pathway 294 11 UFGT (214) View species results
Steroid pathway 153 12 CAS (62) View species results
Rosmarinic acid pathway 131 7 4CL (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1888 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status
syringa_oblata_Ob0206714.1 Flavonoid CHS low borderline
syringa_oblata_Ob0212213.1 Flavonoid CHS low borderline
syringa_oblata_Ob0215469.1 Flavonoid CHS medium pass
syringa_oblata_Ob0225337.1 Flavonoid CHS medium pass
syringa_oblata_Ob0226781.1 Flavonoid CHS medium pass
syringa_oblata_Ob0230120.1 Flavonoid CHS low borderline
syringa_oblata_Ob0232084.1 Flavonoid CHS medium pass
syringa_oblata_Ob0240315.1 Flavonoid CHS medium pass
syringa_oblata_Ob0242534.1 Flavonoid CHS low borderline
syringa_oblata_Ob0251750.1 Flavonoid CHS low borderline