PlantSME Plant secondary metabolism enzyme database

Tagetes erecta (tagetes_erecta)

Imported from atlas release summary for Tagetes erecta.

1880
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 34.26% Alkaloid pathway 18.62% Phenylpropanoid pathway 17.71% Flavonoid pathway 11.6% Rosmarinic acid pathway 10.53% Steroid pathway 7.29%
Family Distribution
C4H 7.18% C3'H/CYP98A 6.95% BAHD 6.81% CYP76 4.66% IFS 4.47% UGT 3.88% T3O 3.83% UFGT 3.58%
Other Families 58.64%
More Families (97)
7DLGT 169 3.56% 4CL 146 3.08% POD 127 2.68% DWF4/CYP90B1 119 2.51% F3'H/CYP75B 103 2.17% F3H 98 2.06% BR6OX2/CYP85A2 97 2.04% SMT1/SMT2/SMT3 86 1.81% STR 83 1.75% NMT 71 1.5% TPS 68 1.43% GES 66 1.39% CAS 66 1.39% CYP71 60 1.26% CODM/T6ODM 59 1.24% CYP90D1 59 1.24% CAD 58 1.22% H6H 50 1.05% CSE 49 1.03% HCT 47 0.99% TAT 46 0.97% COMT 43 0.91% PYKS 42 0.88% G8O/G8H 41 0.86% T16H 39 0.82% F3'5'H/CYP75A 38 0.8% RAS 37 0.78% TRI/TRII 36 0.76% 7DLH 36 0.76% IO 34 0.72% 16OMT 33 0.7% LAC 31 0.65% F5H/CYP84A 30 0.63% BBE 29 0.61% PMT 28 0.59% SLS 27 0.57% PAL 27 0.57% SGD 26 0.55% GS 26 0.55% FNS 25 0.53% CYP51G1 25 0.53% IFR 24 0.51% CPD/CYP90A1 24 0.51% NCS 21 0.44% CCoAOMT 21 0.44% 8HGO 17 0.36% ANR 15 0.32% COR 14 0.29% BR6OX1/CYP85A1 14 0.29% LAMT 13 0.27% ANS/LDOX 13 0.27% ROT3/CYP90C1 12 0.25% MPO 11 0.23% CYP719 11 0.23% CHI 10 0.21% CYP80B1 9 0.19% TYDC_DDC 9 0.19% CPR 9 0.19% GGPPS 9 0.19% CHS 8 0.17% CCR 8 0.17% HPPR 8 0.17% AACT 8 0.17% ISY 7 0.15% DET2 7 0.15% SQE 7 0.15% CNMT 6 0.13% SQS/FDFT1 6 0.13% SMO1/SMO2 6 0.13% FPPS 6 0.13% HMGR 6 0.13% DXS 6 0.13% DWF7 5 0.11% XMT_MXMT_DXMT 4 0.08% DXR 4 0.08% HMGS 4 0.08% MVK 4 0.08% MVD 4 0.08% DWF1 3 0.06% MCT/IspD 3 0.06% PMK 3 0.06% HDS/IspG 3 0.06% ADC 2 0.04% 6OMT_4OMT_SOMT 2 0.04% FK 2 0.04% HDR/IspH 2 0.04% IDI 2 0.04% CMK/IspE 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% TDC 1 0.02% DFR 1 0.02% FLS 1 0.02% CPI1 1 0.02% DWF5 1 0.02% GPPS 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 644 19 BAHD (262) View species results
Alkaloid pathway 350 21 7DLGT (72) View species results
Phenylpropanoid pathway 333 11 POD (116) View species results
Flavonoid pathway 218 9 UFGT (160) View species results
Rosmarinic acid pathway 198 7 C4H (94) View species results
Steroid pathway 137 10 SMT1/SMT2/SMT3 (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2065 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 407 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: XMT_MXMT_DXMT
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Gene Pathway Family Confidence Status Best Target
tagetes_erecta_GWHPDOCX004979 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00010__sp_Q9FZN8_TCS1_CAMSI
tagetes_erecta_GWHPDOCX011444 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI
tagetes_erecta_GWHPDOCX022194 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA
tagetes_erecta_GWHPDOCX025060 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI