PlantSME Plant secondary metabolism enzyme database

Tapiscia sinensis (tapiscia_sinensis)

Imported from atlas release summary for Tapiscia sinensis.

1246
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.1% Alkaloid pathway 21.11% Phenylpropanoid pathway 18.94% Flavonoid pathway 14.53% Rosmarinic acid pathway 9.23% Steroid pathway 6.1%
Family Distribution
BAHD 6.06% C4H 5.63% C3'H/CYP98A 5.45% UGT 5.35% 7DLGT 4.78% UFGT 4.56% 4CL 4.49% IFS 3.57%
Other Families 60.11%
More Families (97)
POD 100 3.57% CYP76 97 3.46% T3O 89 3.17% F3H 76 2.71% DWF4/CYP90B1 67 2.39% NMT 58 2.07% F3'H/CYP75B 48 1.71% STR 46 1.64% CAD 45 1.6% SMT1/SMT2/SMT3 43 1.53% H6H 40 1.43% CODM/T6ODM 40 1.43% TRI/TRII 37 1.32% LAC 33 1.18% CYP71 32 1.14% TAT 31 1.11% GS 30 1.07% BR6OX2/CYP85A2 30 1.07% CYP90D1 28 1.0% IO 27 0.96% IFR 27 0.96% CSE 27 0.96% HCT 26 0.93% CAS 26 0.93% T16H 23 0.82% ANR 22 0.78% PYKS 21 0.75% PMT 21 0.75% FNS 20 0.71% NCS 18 0.64% LAMT 18 0.64% CCR 17 0.61% TPS 17 0.61% G8O/G8H 16 0.57% RAS 16 0.57% BR6OX1/CYP85A1 16 0.57% COR 15 0.53% GES 15 0.53% PAL 15 0.53% CPD/CYP90A1 15 0.53% 7DLH 13 0.46% BBE 13 0.46% CNMT 12 0.43% SGD 12 0.43% SLS 11 0.39% F3'5'H/CYP75A 11 0.39% CHS 11 0.39% DFR 11 0.39% ANS/LDOX 11 0.39% MPO 10 0.36% F5H/CYP84A 10 0.36% COMT 9 0.32% CYP51G1 9 0.32% ROT3/CYP90C1 8 0.29% 8HGO 7 0.25% ISY 7 0.25% CCoAOMT 7 0.25% GGPPS 7 0.25% FPPS 7 0.25% CPR 6 0.21% SQE 6 0.21% DXS 6 0.21% AACT 6 0.21% CYP80B1 5 0.18% 16OMT 5 0.18% HPPR 5 0.18% DET2 5 0.18% SQS/FDFT1 5 0.18% HMGR 5 0.18% CYP719 4 0.14% CHI 4 0.14% SMO1/SMO2 4 0.14% MVK 4 0.14% MVD 4 0.14% ODC 3 0.11% TYDC_DDC 3 0.11% MCT/IspD 3 0.11% XMT_MXMT_DXMT 2 0.07% TDC 2 0.07% FLS 2 0.07% DWF7 2 0.07% DWF1 2 0.07% PMK 2 0.07% IDI 2 0.07% MDS/IspF 2 0.07% HDS/IspG 2 0.07% CYP80F1 1 0.04% 6OMT_4OMT_SOMT 1 0.04% ADC 1 0.04% CPI1 1 0.04% HYD1 1 0.04% DWF5 1 0.04% FK 1 0.04% DXR 1 0.04% CMK/IspE 1 0.04% HDR/IspH 1 0.04% HMGS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 375 19 UGT (139) View species results
Alkaloid pathway 263 22 7DLGT (57) View species results
Phenylpropanoid pathway 236 11 POD (94) View species results
Flavonoid pathway 181 12 UFGT (114) View species results
Rosmarinic acid pathway 115 7 C4H (37) View species results
Steroid pathway 76 14 SMT1/SMT2/SMT3 (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 971 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
tapiscia_sinensis_evm.model.scaf_70.347 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
tapiscia_sinensis_evm.model.scaf_72.11 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
tapiscia_sinensis_evm.model.scaf_74.48 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
tapiscia_sinensis_evm.model.scaf_77.66.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
tapiscia_sinensis_evm.model.scaf_78.85 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
tapiscia_sinensis_evm.model.scaf_8.117 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
tapiscia_sinensis_evm.model.scaf_81.54 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
tapiscia_sinensis_evm.model.scaf_85.193 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH