PlantSME Plant secondary metabolism enzyme database

Thalictrum thalictroides (thalictrum_thalictroides)

Imported from atlas release summary for Thalictrum thalictroides.

1779
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.41% Alkaloid pathway 23.78% Phenylpropanoid pathway 17.31% Flavonoid pathway 10.79% Rosmarinic acid pathway 9.84% Steroid pathway 7.87%
Family Distribution
C4H 7.28% C3'H/CYP98A 6.56% CYP76 4.84% IFS 4.3% BAHD 4.28% UGT 4.21% T3O 3.67% 7DLGT 3.24%
Other Families 61.61%
More Families (98)
UFGT 138 3.0% POD 137 2.98% DWF4/CYP90B1 134 2.91% F3'H/CYP75B 124 2.69% 4CL 117 2.54% BR6OX2/CYP85A2 101 2.19% NMT 91 1.98% F3H 88 1.91% CAS 84 1.82% TPS 83 1.8% GES 76 1.65% CAD 71 1.54% H6H 65 1.41% STR 62 1.35% SMT1/SMT2/SMT3 60 1.3% CYP71 58 1.26% T16H 57 1.24% IO 49 1.06% TRI/TRII 48 1.04% CODM/T6ODM 46 1.0% CYP90D1 45 0.98% F5H/CYP84A 42 0.91% SGD 41 0.89% FNS 41 0.89% COMT 38 0.83% IFR 37 0.8% GS 35 0.76% HCT 35 0.76% G8O/G8H 34 0.74% LAC 33 0.72% NCS 32 0.7% RAS 32 0.7% CSE 29 0.63% SLS 28 0.61% CYP80B1 27 0.59% BBE 27 0.59% 7DLH 27 0.59% F3'5'H/CYP75A 27 0.59% CNMT 26 0.56% CPD/CYP90A1 26 0.56% PYKS 25 0.54% 16OMT 25 0.54% CYP51G1 25 0.54% PMT 23 0.5% CCR 21 0.46% ANS/LDOX 20 0.43% PAL 18 0.39% BR6OX1/CYP85A1 17 0.37% MPO 16 0.35% CYP719 15 0.33% ANR 15 0.33% ROT3/CYP90C1 15 0.33% LAMT 12 0.26% COR 12 0.26% 8HGO 12 0.26% ISY 11 0.24% DFR 11 0.24% TAT 11 0.24% CPR 11 0.24% CHS 9 0.2% HPPR 9 0.2% 6OMT_4OMT_SOMT 8 0.17% SQS/FDFT1 8 0.17% XMT_MXMT_DXMT 7 0.15% MVK 7 0.15% HDR/IspH 7 0.15% FPPS 7 0.15% GGPPS 7 0.15% DET2 6 0.13% PMK 6 0.13% HMGR 6 0.13% CHI 5 0.11% SQE 5 0.11% CPI1 5 0.11% SMO1/SMO2 5 0.11% TYDC_DDC 4 0.09% FLS 4 0.09% CCoAOMT 4 0.09% DWF1 4 0.09% HDS/IspG 4 0.09% MVD 4 0.09% ADC 3 0.07% ODC 3 0.07% CYP80F1 3 0.07% DXS 3 0.07% MCT/IspD 3 0.07% GPPS 3 0.07% AACT 3 0.07% FK 2 0.04% HYD1 2 0.04% DWF5 2 0.04% CMK/IspE 2 0.04% DXR 2 0.04% MDS/IspF 2 0.04% IDI 2 0.04% HMGS 2 0.04% TDC 1 0.02% DWF7 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 541 20 UGT (171) View species results
Alkaloid pathway 423 26 7DLGT (67) View species results
Phenylpropanoid pathway 308 13 POD (120) View species results
Flavonoid pathway 192 11 UFGT (120) View species results
Rosmarinic acid pathway 175 7 C4H (94) View species results
Steroid pathway 140 14 CAS (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2081 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 264 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
KAF5202221.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
KAF5203870.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
KAF5204930.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
KAF5204931.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
KAF5205669.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
KAF5206012.1[Thalictrum Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
KAF5206614.1[Thalictrum Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
KAF5206700.1[Thalictrum Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
KAF5206977.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
KAF5207156.1[Thalictrum Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
KAF5208204.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
KAF5208205.1[Thalictrum Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR