PlantSME Plant secondary metabolism enzyme database

Tiarella polyphylla (tiarella_polyphylla)

Imported from atlas release summary for Tiarella polyphylla.

1478
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.72% Alkaloid pathway 21.52% Phenylpropanoid pathway 18.47% Flavonoid pathway 15.49% Steroid pathway 7.04% Rosmarinic acid pathway 6.77%
Family Distribution
C4H 6.16% C3'H/CYP98A 5.5% BAHD 4.9% UGT 4.62% 7DLGT 4.39% UFGT 4.39% CYP76 4.02% IFS 3.68%
Other Families 62.34%
More Families (96)
4CL 120 3.42% POD 109 3.11% F3H 96 2.74% DWF4/CYP90B1 93 2.65% T3O 75 2.14% F3'H/CYP75B 72 2.05% NMT 71 2.02% CAD 62 1.77% STR 60 1.71% CAS 59 1.68% CODM/T6ODM 55 1.57% SMT1/SMT2/SMT3 54 1.54% TPS 52 1.48% T16H 51 1.45% GES 51 1.45% TRI/TRII 50 1.43% H6H 50 1.43% BR6OX2/CYP85A2 50 1.43% G8O/G8H 45 1.28% LAC 43 1.23% PAL 42 1.2% PYKS 36 1.03% COMT 35 1.0% IFR 34 0.97% F3'5'H/CYP75A 32 0.91% GS 29 0.83% IO 28 0.8% 7DLH 28 0.8% HCT 28 0.8% CYP71 28 0.8% CYP90D1 24 0.68% NCS 23 0.66% LAMT 23 0.66% RAS 23 0.66% F5H/CYP84A 21 0.6% BR6OX1/CYP85A1 21 0.6% PMT 20 0.57% SGD 19 0.54% FNS 19 0.54% SLS 18 0.51% CSE 18 0.51% 16OMT 17 0.48% CCR 17 0.48% ANR 16 0.46% TAT 16 0.46% CPD/CYP90A1 16 0.46% DFR 14 0.4% CPR 14 0.4% 8HGO 12 0.34% BBE 12 0.34% ROT3/CYP90C1 11 0.31% CHS 9 0.26% COR 8 0.23% CNMT 8 0.23% CYP80B1 8 0.23% CCoAOMT 8 0.23% AACT 8 0.23% GGPPS 8 0.23% FPPS 8 0.23% TYDC_DDC 7 0.2% 6OMT_4OMT_SOMT 7 0.2% ANS/LDOX 7 0.2% SQE 7 0.2% ISY 6 0.17% CHI 6 0.17% HPPR 6 0.17% CYP719 5 0.14% MPO 5 0.14% MVD 5 0.14% SQS/FDFT1 4 0.11% HDS/IspG 4 0.11% DXS 4 0.11% XMT_MXMT_DXMT 3 0.09% SMO1/SMO2 3 0.09% DET2 3 0.09% MVK 3 0.09% TDC 2 0.06% DWF5 2 0.06% HMGR 2 0.06% PMK 2 0.06% MCT/IspD 2 0.06% CYP80F1 1 0.03% ADC 1 0.03% ODC 1 0.03% FLS 1 0.03% DWF7 1 0.03% HYD1 1 0.03% CYP51G1 1 0.03% DWF1 1 0.03% CPI1 1 0.03% FK 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03% HDR/IspH 1 0.03% IDI 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 454 18 UGT (152) View species results
Alkaloid pathway 318 23 7DLGT (69) View species results
Phenylpropanoid pathway 273 12 POD (99) View species results
Flavonoid pathway 229 11 UFGT (145) View species results
Steroid pathway 104 11 CAS (50) View species results
Rosmarinic acid pathway 100 7 4CL (29) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1307 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
tiarella_polyphylla_GWHPBKAH011043 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
tiarella_polyphylla_GWHPBKAH011046 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
tiarella_polyphylla_GWHPBKAH011218 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO
tiarella_polyphylla_GWHPBKAH014601 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO
tiarella_polyphylla_GWHPBKAH014603 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO
tiarella_polyphylla_GWHPBKAH014605 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO
tiarella_polyphylla_GWHPBKAH014606 Alkaloid 6OMT_4OMT_SOMT low borderline 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO