Trifolium subterranum (trifolium_subterranum)
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Imported from atlas release summary for Trifolium subterranum.
1740
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1740
Candidate Genes
C3'H/CYP98A
6.61%
C4H
6.23%
UGT
5.06%
BAHD
4.99%
7DLGT
4.66%
UFGT
4.62%
IFS
4.18%
T3O
3.82%
Other Families
59.82%
More Families (96)
POD
169
3.73%
CYP76
158
3.49%
4CL
135
2.98%
F3H
135
2.98%
NMT
100
2.21%
DWF4/CYP90B1
96
2.12%
F3'H/CYP75B
94
2.08%
BR6OX2/CYP85A2
89
1.97%
CODM/T6ODM
87
1.92%
STR
70
1.55%
CYP71
66
1.46%
H6H
58
1.28%
SMT1/SMT2/SMT3
55
1.22%
CSE
52
1.15%
CYP90D1
52
1.15%
CAD
50
1.1%
COMT
48
1.06%
SGD
46
1.02%
TRI/TRII
44
0.97%
HCT
43
0.95%
CAS
43
0.95%
PYKS
41
0.91%
RAS
40
0.88%
IFR
39
0.86%
7DLH
38
0.84%
BBE
36
0.8%
LAC
36
0.8%
ROT3/CYP90C1
35
0.77%
16OMT
31
0.69%
T16H
30
0.66%
G8O/G8H
29
0.64%
F3'5'H/CYP75A
29
0.64%
GS
28
0.62%
GES
26
0.57%
TPS
26
0.57%
BR6OX1/CYP85A1
25
0.55%
IO
24
0.53%
PMT
24
0.53%
CCR
24
0.53%
ANR
22
0.49%
SLS
21
0.46%
COR
21
0.46%
PAL
21
0.46%
CYP51G1
20
0.44%
FNS
19
0.42%
8HGO
17
0.38%
NCS
16
0.35%
DFR
16
0.35%
CHS
16
0.35%
LAMT
15
0.33%
F5H/CYP84A
13
0.29%
TAT
12
0.27%
CYP719
11
0.24%
CCoAOMT
11
0.24%
ANS/LDOX
10
0.22%
CPD/CYP90A1
10
0.22%
TDC
9
0.2%
MPO
9
0.2%
ISY
8
0.18%
CNMT
8
0.18%
CYP80B1
8
0.18%
AACT
8
0.18%
ODC
7
0.15%
CPR
7
0.15%
DXS
7
0.15%
HMGR
7
0.15%
CHI
6
0.13%
HPPR
6
0.13%
SQS/FDFT1
6
0.13%
MVK
6
0.13%
GGPPS
6
0.13%
FPPS
6
0.13%
TYDC_DDC
5
0.11%
FLS
5
0.11%
SQE
5
0.11%
DET2
5
0.11%
HDS/IspG
5
0.11%
HDR/IspH
5
0.11%
DXR
5
0.11%
DWF1
4
0.09%
SMO1/SMO2
4
0.09%
MVD
4
0.09%
HMGS
4
0.09%
CPI1
3
0.07%
MCT/IspD
3
0.07%
CYP80F1
2
0.04%
HYD1
2
0.04%
CMK/IspE
2
0.04%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 509 | 19 | UGT (216) | View species results |
| Alkaloid pathway | 385 | 20 | 7DLGT (92) | View species results |
| Phenylpropanoid pathway | 360 | 12 | POD (156) | View species results |
| Flavonoid pathway | 268 | 8 | UFGT (195) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (57) | View species results |
| Steroid pathway | 86 | 13 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1793 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 309 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| trifolium_subterranum_Ts_v2.0_14755.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| trifolium_subterranum_Ts_v2.0_15250.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| trifolium_subterranum_Ts_v2.0_15290.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| trifolium_subterranum_Ts_v2.0_15940.1 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| trifolium_subterranum_Ts_v2.0_16087.1 | Alkaloid | NMT | low | borderline | NMT__00030__sp_Q43088_RBCMT_PEA |
| trifolium_subterranum_Ts_v2.0_17479.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| trifolium_subterranum_Ts_v2.0_17481.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| trifolium_subterranum_Ts_v2.0_17703.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| trifolium_subterranum_Ts_v2.0_17705.1 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| trifolium_subterranum_Ts_v2.0_17794.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| trifolium_subterranum_Ts_v2.0_17885.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| trifolium_subterranum_Ts_v2.0_18604.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| trifolium_subterranum_Ts_v2.0_19572.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| trifolium_subterranum_Ts_v2.0_19724.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| trifolium_subterranum_Ts_v2.0_19899.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| trifolium_subterranum_Ts_v2.0_19987.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| trifolium_subterranum_Ts_v2.0_21479.1 | Alkaloid | NMT | low | borderline | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| trifolium_subterranum_Ts_v2.0_23212.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| trifolium_subterranum_Ts_v2.0_23486.1 | Alkaloid | NMT | low | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| trifolium_subterranum_Ts_v2.0_23502.1 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| trifolium_subterranum_Ts_v2.0_23612.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| trifolium_subterranum_Ts_v2.0_24729.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| trifolium_subterranum_Ts_v2.0_25027.1 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| trifolium_subterranum_Ts_v2.0_26925.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| trifolium_subterranum_Ts_v2.0_27030.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| trifolium_subterranum_Ts_v2.0_27273.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| trifolium_subterranum_Ts_v2.0_27292.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| trifolium_subterranum_Ts_v2.0_27446.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| trifolium_subterranum_Ts_v2.0_27640.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| trifolium_subterranum_Ts_v2.0_27971.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| trifolium_subterranum_Ts_v2.0_28747.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| trifolium_subterranum_Ts_v2.0_28749.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| trifolium_subterranum_Ts_v2.0_29263.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| trifolium_subterranum_Ts_v2.0_29583.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| trifolium_subterranum_Ts_v2.0_30287.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| trifolium_subterranum_Ts_v2.0_30571.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| trifolium_subterranum_Ts_v2.0_31138.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| trifolium_subterranum_Ts_v2.0_31349.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| trifolium_subterranum_Ts_v2.0_31699.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| trifolium_subterranum_Ts_v2.0_32145.1 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| trifolium_subterranum_Ts_v2.0_32811.1 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| trifolium_subterranum_Ts_v2.0_33099.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| trifolium_subterranum_Ts_v2.0_33682.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| trifolium_subterranum_Ts_v2.0_33910.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| trifolium_subterranum_Ts_v2.0_34391.1 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| trifolium_subterranum_Ts_v2.0_34616.1 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| trifolium_subterranum_Ts_v2.0_35034.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| trifolium_subterranum_Ts_v2.0_35044.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| trifolium_subterranum_Ts_v2.0_35235.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| trifolium_subterranum_Ts_v2.0_36400.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |