Trifolium subterranum (trifolium_subterranum)
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Imported from atlas release summary for Trifolium subterranum.
1740
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1740
Candidate Genes
C3'H/CYP98A
6.61%
C4H
6.23%
UGT
5.06%
BAHD
4.99%
7DLGT
4.66%
UFGT
4.62%
IFS
4.18%
T3O
3.82%
Other Families
59.82%
More Families (96)
POD
169
3.73%
CYP76
158
3.49%
4CL
135
2.98%
F3H
135
2.98%
NMT
100
2.21%
DWF4/CYP90B1
96
2.12%
F3'H/CYP75B
94
2.08%
BR6OX2/CYP85A2
89
1.97%
CODM/T6ODM
87
1.92%
STR
70
1.55%
CYP71
66
1.46%
H6H
58
1.28%
SMT1/SMT2/SMT3
55
1.22%
CSE
52
1.15%
CYP90D1
52
1.15%
CAD
50
1.1%
COMT
48
1.06%
SGD
46
1.02%
TRI/TRII
44
0.97%
HCT
43
0.95%
CAS
43
0.95%
PYKS
41
0.91%
RAS
40
0.88%
IFR
39
0.86%
7DLH
38
0.84%
BBE
36
0.8%
LAC
36
0.8%
ROT3/CYP90C1
35
0.77%
16OMT
31
0.69%
T16H
30
0.66%
G8O/G8H
29
0.64%
F3'5'H/CYP75A
29
0.64%
GS
28
0.62%
GES
26
0.57%
TPS
26
0.57%
BR6OX1/CYP85A1
25
0.55%
IO
24
0.53%
PMT
24
0.53%
CCR
24
0.53%
ANR
22
0.49%
SLS
21
0.46%
COR
21
0.46%
PAL
21
0.46%
CYP51G1
20
0.44%
FNS
19
0.42%
8HGO
17
0.38%
NCS
16
0.35%
DFR
16
0.35%
CHS
16
0.35%
LAMT
15
0.33%
F5H/CYP84A
13
0.29%
TAT
12
0.27%
CYP719
11
0.24%
CCoAOMT
11
0.24%
ANS/LDOX
10
0.22%
CPD/CYP90A1
10
0.22%
TDC
9
0.2%
MPO
9
0.2%
ISY
8
0.18%
CNMT
8
0.18%
CYP80B1
8
0.18%
AACT
8
0.18%
ODC
7
0.15%
CPR
7
0.15%
DXS
7
0.15%
HMGR
7
0.15%
CHI
6
0.13%
HPPR
6
0.13%
SQS/FDFT1
6
0.13%
MVK
6
0.13%
GGPPS
6
0.13%
FPPS
6
0.13%
TYDC_DDC
5
0.11%
FLS
5
0.11%
SQE
5
0.11%
DET2
5
0.11%
HDS/IspG
5
0.11%
HDR/IspH
5
0.11%
DXR
5
0.11%
DWF1
4
0.09%
SMO1/SMO2
4
0.09%
MVD
4
0.09%
HMGS
4
0.09%
CPI1
3
0.07%
MCT/IspD
3
0.07%
CYP80F1
2
0.04%
HYD1
2
0.04%
CMK/IspE
2
0.04%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 509 | 19 | UGT (216) | View species results |
| Alkaloid pathway | 385 | 20 | 7DLGT (92) | View species results |
| Phenylpropanoid pathway | 360 | 12 | POD (156) | View species results |
| Flavonoid pathway | 268 | 8 | UFGT (195) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (57) | View species results |
| Steroid pathway | 86 | 13 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1793 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 309 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| trifolium_subterranum_Ts_v2.0_06810.1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| trifolium_subterranum_Ts_v2.0_08119.1 | Terpenoid | TPS | medium | pass | TPS__00076__sp_D0UZK2_TPS1_CITSI |
| trifolium_subterranum_Ts_v2.0_08795.1 | Terpenoid | TPS | medium | pass | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| trifolium_subterranum_Ts_v2.0_08803.1 | Terpenoid | TPS | medium | pass | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| trifolium_subterranum_Ts_v2.0_08820.1 | Terpenoid | TPS | medium | pass | TPS__00062__sp_B9T536_TPS10_RICCO |
| trifolium_subterranum_Ts_v2.0_08822.1 | Terpenoid | TPS | medium | pass | TPS__00062__sp_B9T536_TPS10_RICCO |
| trifolium_subterranum_Ts_v2.0_09340.1 | Terpenoid | TPS | low | borderline | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| trifolium_subterranum_Ts_v2.0_09572.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_09905.1 | Terpenoid | TPS | medium | pass | TPS__00053__sp_A0A7G5KLV3_TPS4_CANOD |
| trifolium_subterranum_Ts_v2.0_09906.1 | Terpenoid | TPS | medium | pass | TPS__00053__sp_A0A7G5KLV3_TPS4_CANOD |
| trifolium_subterranum_Ts_v2.0_11829.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_11833.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_12036.1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| trifolium_subterranum_Ts_v2.0_14554.1 | Terpenoid | TPS | medium | pass | TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF |
| trifolium_subterranum_Ts_v2.0_14555.1 | Terpenoid | TPS | medium | pass | TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF |
| trifolium_subterranum_Ts_v2.0_22214.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_22217.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_23278.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_23281.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_24581.1 | Terpenoid | TPS | medium | pass | TPS__00059__sp_B9RXW0_TPS7_RICCO |
| trifolium_subterranum_Ts_v2.0_24731.1 | Terpenoid | TPS | medium | pass | TPS__00062__sp_B9T536_TPS10_RICCO |
| trifolium_subterranum_Ts_v2.0_30989.1 | Terpenoid | TPS | medium | pass | TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF |
| trifolium_subterranum_Ts_v2.0_36110.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| trifolium_subterranum_Ts_v2.0_36294.1 | Terpenoid | TPS | low | borderline | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| trifolium_subterranum_Ts_v2.0_36375.1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| trifolium_subterranum_Ts_v2.0_36377.1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |