PlantSME Plant secondary metabolism enzyme database

Tritomaria exsectiformis (tritomaria_exsectiformis)

Imported from atlas release summary for Tritomaria exsectiformis.

593
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.79% Phenylpropanoid pathway 24.28% Alkaloid pathway 22.6% Flavonoid pathway 12.65% Rosmarinic acid pathway 9.27% Steroid pathway 6.41%
Family Distribution
C4H 5.92% C3'H/CYP98A 4.82% BAHD 4.82% 4CL 4.44% CYP76 4.12% POD 4.05% STR 3.99% NMT 3.34%
Other Families 64.5%
More Families (96)
IFS 47 3.02% F3H 47 3.02% IFR 39 2.51% UGT 39 2.51% 7DLGT 34 2.19% UFGT 33 2.12% BR6OX2/CYP85A2 33 2.12% T3O 32 2.06% H6H 32 2.06% GS 29 1.86% TRI/TRII 27 1.74% DWF4/CYP90B1 27 1.74% CSE 22 1.41% TPS 21 1.35% F3'H/CYP75B 20 1.29% IO 19 1.22% LAC 18 1.16% PYKS 17 1.09% CODM/T6ODM 17 1.09% HCT 17 1.09% CAD 17 1.09% CAS 17 1.09% COMT 16 1.03% SMT1/SMT2/SMT3 16 1.03% F3'5'H/CYP75A 15 0.96% RAS 14 0.9% CHS 13 0.84% T16H 12 0.77% PAL 12 0.77% SGD 11 0.71% G8O/G8H 10 0.64% CNMT 10 0.64% CPD/CYP90A1 10 0.64% COR 9 0.58% FNS 9 0.58% ANR 9 0.58% CYP71 9 0.58% PMK 9 0.58% NCS 8 0.51% CYP80B1 8 0.51% F5H/CYP84A 8 0.51% BR6OX1/CYP85A1 8 0.51% 7DLH 7 0.45% PMT 7 0.45% CYP90D1 7 0.45% FPPS 7 0.45% 8HGO 6 0.39% CYP719 6 0.39% ISY 6 0.39% GES 6 0.39% DFR 6 0.39% GGPPS 6 0.39% SLS 5 0.32% BBE 5 0.32% SQS/FDFT1 5 0.32% CYP51G1 5 0.32% MVD 5 0.32% HDR/IspH 5 0.32% LAMT 4 0.26% ANS/LDOX 4 0.26% HPPR 4 0.26% TAT 4 0.26% ROT3/CYP90C1 4 0.26% MCT/IspD 4 0.26% DXS 4 0.26% AACT 4 0.26% ADC 3 0.19% CHI 3 0.19% CCR 3 0.19% CPR 3 0.19% DET2 3 0.19% SMO1/SMO2 3 0.19% DWF7 3 0.19% MVK 3 0.19% HMGR 3 0.19% TDC 2 0.13% MPO 2 0.13% 16OMT 2 0.13% FLS 2 0.13% HYD1 2 0.13% FK 2 0.13% DWF1 2 0.13% GPPS 2 0.13% IDI 2 0.13% TYDC_DDC 1 0.06% 6OMT_4OMT_SOMT 1 0.06% ODC 1 0.06% CCoAOMT 1 0.06% CPI1 1 0.06% SQE 1 0.06% DWF5 1 0.06% DXR 1 0.06% CMK/IspE 1 0.06% HDS/IspG 1 0.06% MDS/IspF 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 147 19 BAHD (50) View species results
Phenylpropanoid pathway 144 12 POD (56) View species results
Alkaloid pathway 134 20 NMT (20) View species results
Flavonoid pathway 75 11 UFGT (29) View species results
Rosmarinic acid pathway 55 7 C4H (27) View species results
Steroid pathway 38 10 CAS (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 523 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 106 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status
Texs4050080320 Rosmarinic Acid 4CL low borderline
Texs4333980110170 Rosmarinic Acid 4CL medium pass
Texs4334320110480 Rosmarinic Acid 4CL low borderline
Texs4355000122390 Rosmarinic Acid 4CL low borderline
Texs4366330133150 Rosmarinic Acid 4CL low borderline
Texs4374310146610 Rosmarinic Acid 4CL medium pass
Texs4382780167060 Rosmarinic Acid 4CL low borderline
Texs4384250170980 Rosmarinic Acid 4CL medium pass
Texs4392890198780 Rosmarinic Acid 4CL low borderline
Texs4394450202450 Rosmarinic Acid 4CL medium pass
Texs4396800207810 Rosmarinic Acid 4CL medium pass
Texs4397060208240 Rosmarinic Acid 4CL low borderline
Texs4451250211160 Rosmarinic Acid 4CL medium pass
Texs4451280211190 Rosmarinic Acid 4CL medium pass
Texs4584480215400 Rosmarinic Acid 4CL low borderline
Texs4584490215410 Rosmarinic Acid 4CL low borderline
Texs5580228000 Rosmarinic Acid 4CL low borderline
Texs7500248510 Rosmarinic Acid 4CL low borderline
Texs9320266050 Rosmarinic Acid 4CL medium pass