PlantSME Plant secondary metabolism enzyme database

Vaccinium bracteatum (vaccinium_bracteatum)

Imported from atlas release summary for Vaccinium bracteatum.

1710
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.06% Alkaloid pathway 23.68% Phenylpropanoid pathway 17.08% Flavonoid pathway 13.57% Rosmarinic acid pathway 9.42% Steroid pathway 6.2%
Family Distribution
C4H 6.43% C3'H/CYP98A 6.13% BAHD 4.99% UGT 4.83% 7DLGT 4.41% UFGT 4.39% IFS 4.11% CYP76 3.81%
Other Families 60.92%
More Families (97)
T3O 139 3.23% 4CL 132 3.06% POD 121 2.81% F3H 119 2.76% DWF4/CYP90B1 97 2.25% F3'H/CYP75B 85 1.97% CAD 85 1.97% NMT 79 1.83% CODM/T6ODM 73 1.69% CAS 73 1.69% STR 68 1.58% BR6OX2/CYP85A2 67 1.55% TPS 59 1.37% GES 57 1.32% H6H 55 1.28% HCT 55 1.28% IO 53 1.23% GS 53 1.23% CYP71 53 1.23% T16H 47 1.09% LAC 45 1.04% RAS 43 1.0% TAT 43 1.0% CYP90D1 40 0.93% SMT1/SMT2/SMT3 37 0.86% BR6OX1/CYP85A1 36 0.84% SLS 34 0.79% TRI/TRII 34 0.79% PMT 33 0.77% COMT 33 0.77% PYKS 32 0.74% IFR 32 0.74% G8O/G8H 31 0.72% SGD 31 0.72% ANR 31 0.72% F3'5'H/CYP75A 27 0.63% F5H/CYP84A 27 0.63% CSE 25 0.58% CPD/CYP90A1 25 0.58% CYP51G1 24 0.56% 16OMT 23 0.53% BBE 21 0.49% COR 18 0.42% CCR 18 0.42% LAMT 17 0.39% 7DLH 17 0.39% FNS 17 0.39% PAL 15 0.35% 8HGO 13 0.3% ANS/LDOX 13 0.3% HPPR 12 0.28% NCS 11 0.26% FPPS 11 0.26% AACT 11 0.26% MPO 10 0.23% DFR 10 0.23% CHS 10 0.23% ROT3/CYP90C1 10 0.23% CYP719 9 0.21% DET2 9 0.21% CYP80B1 7 0.16% CNMT 7 0.16% CPR 7 0.16% SQS/FDFT1 6 0.14% GGPPS 6 0.14% ISY 5 0.12% SQE 5 0.12% SMO1/SMO2 5 0.12% DXS 5 0.12% MVD 5 0.12% TYDC_DDC 4 0.09% CCoAOMT 4 0.09% DWF7 4 0.09% HMGR 4 0.09% MVK 4 0.09% GPPS 4 0.09% ODC 3 0.07% CHI 3 0.07% HDR/IspH 3 0.07% ADC 2 0.05% TDC 2 0.05% DWF1 2 0.05% DWF5 2 0.05% HYD1 2 0.05% MCT/IspD 2 0.05% PMK 2 0.05% MDS/IspF 2 0.05% 6OMT_4OMT_SOMT 1 0.02% CYP80F1 1 0.02% FLS 1 0.02% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% DXR 1 0.02% HMGS 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 514 19 UGT (179) View species results
Alkaloid pathway 405 23 7DLGT (83) View species results
Phenylpropanoid pathway 292 11 POD (100) View species results
Flavonoid pathway 232 10 UFGT (166) View species results
Rosmarinic acid pathway 161 7 C4H (57) View species results
Steroid pathway 106 12 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1711 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 313 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
vaccinium_bracteatum_GWHPBPBP001695 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH
vaccinium_bracteatum_GWHPBPBP007403 Rosmarinic Acid CPR low borderline CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
vaccinium_bracteatum_GWHPBPBP008597 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
vaccinium_bracteatum_GWHPBPBP010264 Rosmarinic Acid CPR low borderline CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN
vaccinium_bracteatum_GWHPBPBP031541 Rosmarinic Acid CPR medium pass CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN
vaccinium_bracteatum_GWHPBPBP034346 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
vaccinium_bracteatum_GWHPBPBP035060 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH