PlantSME Plant secondary metabolism enzyme database

Vitis amurensis (vitis_amurensis)

Imported from atlas release summary for Vitis amurensis.

2266
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.07% Alkaloid pathway 24.18% Phenylpropanoid pathway 18.23% Flavonoid pathway 16.68% Steroid pathway 6.53% Rosmarinic acid pathway 6.31%
Family Distribution
C4H 6.18% BAHD 5.3% UGT 5.09% 7DLGT 4.42% C3'H/CYP98A 4.36% UFGT 4.26% POD 3.38% CYP76 3.3%
Other Families 63.71%
More Families (98)
IFS 144 2.76% 4CL 141 2.71% PAL 123 2.36% CAD 119 2.28% F3H 118 2.27% F3'H/CYP75B 105 2.02% NMT 104 2.0% T3O 103 1.98% STR 99 1.9% CAS 98 1.88% CODM/T6ODM 82 1.57% PYKS 82 1.57% DWF4/CYP90B1 77 1.48% G8O/G8H 74 1.42% SMT1/SMT2/SMT3 73 1.4% TPS 71 1.36% GES 67 1.29% BR6OX2/CYP85A2 66 1.27% TRI/TRII 62 1.19% COMT 62 1.19% CHS 59 1.13% GS 55 1.06% 16OMT 46 0.88% SGD 45 0.86% H6H 45 0.86% F3'5'H/CYP75A 45 0.86% IO 44 0.84% CYP71 43 0.83% T16H 42 0.81% DFR 42 0.81% NCS 41 0.79% HCT 41 0.79% LAC 41 0.79% IFR 40 0.77% FNS 39 0.75% ANR 39 0.75% F5H/CYP84A 38 0.73% PMT 34 0.65% 7DLH 31 0.6% CSE 31 0.6% COR 30 0.58% RAS 30 0.58% LAMT 29 0.56% BBE 29 0.56% TAT 28 0.54% CPD/CYP90A1 28 0.54% CCR 27 0.52% CYP90D1 27 0.52% SLS 24 0.46% ANS/LDOX 22 0.42% BR6OX1/CYP85A1 20 0.38% DET2 20 0.38% 8HGO 19 0.36% CPR 19 0.36% CYP80B1 16 0.31% TYDC_DDC 16 0.31% CYP51G1 15 0.29% CNMT 14 0.27% AACT 12 0.23% GGPPS 11 0.21% MPO 10 0.19% DWF1 10 0.19% DXS 10 0.19% DWF7 8 0.15% ADC 7 0.13% ISY 7 0.13% CCoAOMT 7 0.13% HPPR 7 0.13% ROT3/CYP90C1 7 0.13% HMGS 7 0.13% FPPS 7 0.13% CYP719 6 0.12% 6OMT_4OMT_SOMT 6 0.12% FLS 5 0.1% SQS/FDFT1 5 0.1% MVD 5 0.1% TDC 4 0.08% CYP80F1 4 0.08% ODC 4 0.08% SMO1/SMO2 4 0.08% SQE 4 0.08% HDR/IspH 4 0.08% HMGR 4 0.08% MVK 4 0.08% XMT_MXMT_DXMT 3 0.06% CHI 3 0.06% DWF5 2 0.04% MDS/IspF 2 0.04% MCT/IspD 2 0.04% PMK 2 0.04% IDI 2 0.04% CMK/IspE 2 0.04% GPPS 2 0.04% FK 1 0.02% HYD1 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 636 21 UGT (249) View species results
Alkaloid pathway 548 25 7DLGT (96) View species results
Phenylpropanoid pathway 413 12 POD (152) View species results
Flavonoid pathway 378 12 UFGT (198) View species results
Steroid pathway 148 12 CAS (74) View species results
Rosmarinic acid pathway 143 7 PAL (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1680 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 347 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IDI
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Gene Pathway Family Confidence Status Best Target
vitis_amurensis_VAG0104345.1 Terpenoid IDI medium pass IDI__00002__sp_Q39472_IDI1_CLABR
vitis_amurensis_VAG0106664.1 Terpenoid IDI low borderline IDI__00002__sp_Q39472_IDI1_CLABR