Vitis berlandieri x rupestris (vitis_berlandieri_x_rupestris)
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Imported from atlas release summary for Vitis berlandieri x rupestris.
2311
Candidate Protein Records
2178
Pathway-Level Records
5572
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5572
Family-Level Calls
C4H
8.56%
C3'H/CYP98A
7.02%
CYP76
5.53%
IFS
5.28%
UGT
4.11%
BAHD
3.93%
7DLGT
3.84%
T3O
3.82%
Other Families
57.91%
More Families (97)
UFGT
213
3.82%
DWF4/CYP90B1
144
2.58%
F3H
135
2.42%
POD
134
2.4%
BR6OX2/CYP85A2
117
2.1%
CAD
115
2.06%
4CL
111
1.99%
F3'H/CYP75B
110
1.97%
T16H
108
1.94%
STR
89
1.6%
LAC
85
1.53%
CODM/T6ODM
81
1.45%
CAS
80
1.44%
NMT
78
1.4%
PYKS
71
1.27%
TPS
71
1.27%
GES
65
1.17%
IO
57
1.02%
PAL
57
1.02%
SMT1/SMT2/SMT3
56
1.01%
FNS
51
0.92%
CHS
50
0.9%
CYP71
50
0.9%
H6H
49
0.88%
CYP90D1
48
0.86%
TRI/TRII
47
0.84%
HCT
43
0.77%
GS
41
0.74%
COMT
40
0.72%
IFR
39
0.7%
TAT
39
0.7%
G8O/G8H
38
0.68%
F3'5'H/CYP75A
35
0.63%
CPD/CYP90A1
35
0.63%
ANR
34
0.61%
16OMT
31
0.56%
SGD
28
0.5%
7DLH
28
0.5%
BBE
27
0.48%
RAS
27
0.48%
PMT
26
0.47%
CYP51G1
26
0.47%
COR
23
0.41%
NCS
23
0.41%
CSE
23
0.41%
LAMT
22
0.39%
SLS
22
0.39%
CCR
22
0.39%
DFR
19
0.34%
BR6OX1/CYP85A1
19
0.34%
F5H/CYP84A
18
0.32%
CYP80B1
16
0.29%
CPR
14
0.25%
CCoAOMT
13
0.23%
8HGO
12
0.22%
CNMT
11
0.2%
TYDC_DDC
11
0.2%
ROT3/CYP90C1
10
0.18%
CYP719
9
0.16%
DXS
9
0.16%
MPO
8
0.14%
AACT
8
0.14%
ADC
7
0.13%
ISY
6
0.11%
GGPPS
6
0.11%
TDC
5
0.09%
HPPR
5
0.09%
SQS/FDFT1
5
0.09%
SQE
5
0.09%
DWF7
4
0.07%
SMO1/SMO2
4
0.07%
DET2
4
0.07%
HDR/IspH
4
0.07%
FPPS
4
0.07%
ODC
3
0.05%
6OMT_4OMT_SOMT
3
0.05%
ANS/LDOX
3
0.05%
CHI
3
0.05%
DWF1
3
0.05%
IDI
3
0.05%
HMGS
3
0.05%
HMGR
3
0.05%
MVK
3
0.05%
MVD
3
0.05%
XMT_MXMT_DXMT
2
0.04%
DWF5
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
CYP80F1
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 578 | 20 | UGT (221) | View species results |
| Alkaloid pathway | 506 | 23 | 7DLGT (87) | View species results |
| Phenylpropanoid pathway | 406 | 12 | POD (129) | View species results |
| Flavonoid pathway | 325 | 8 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 239 | 7 | C4H (133) | View species results |
| Steroid pathway | 124 | 12 | CAS (70) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2574 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 289 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g247210.p01 | Terpenoid | BAHD | medium | pass | BAHD__00050__sp_Q6DR03_ZDHC3_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g247890.p01 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g252830.p01 | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g253960.p01 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g253980.p01 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g254040.p01 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g254050.p01 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g254810.p01 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g254820.p01 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g255610.p01 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g255740.p01 | Terpenoid | BAHD | medium | pass | BAHD__00057__sp_Q8L7R3_LPCT1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g256540.p01 | Terpenoid | BAHD | medium | pass | BAHD__00002__sp_A0A068BIF1_AT9_ACTER |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g257030.p01 | Terpenoid | BAHD | medium | pass | BAHD__00023__sp_O22975_LPAAT_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g258800.p01 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g261260.p01 | Terpenoid | BAHD | medium | pass | BAHD__00089__sp_Q9SB58_ZDH19_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g273770.p01 | Terpenoid | BAHD | low | borderline | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g274580.p01 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g274590.p01 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g274600.p01 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |