PlantSME Plant secondary metabolism enzyme database

Vitis berlandieri x rupestris (vitis_berlandieri_x_rupestris)

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Imported from atlas release summary for Vitis berlandieri x rupestris.

2311
Candidate Protein Records
2178
Pathway-Level Records
5572
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 26.54% Alkaloid pathway 23.23% Phenylpropanoid pathway 18.64% Flavonoid pathway 14.92% Rosmarinic acid pathway 10.97% Steroid pathway 5.69%
Family Distribution
C4H 8.56% C3'H/CYP98A 7.02% CYP76 5.53% IFS 5.28% UGT 4.11% BAHD 3.93% 7DLGT 3.84% T3O 3.82%
Other Families 57.91%
More Families (97)
UFGT 213 3.82% DWF4/CYP90B1 144 2.58% F3H 135 2.42% POD 134 2.4% BR6OX2/CYP85A2 117 2.1% CAD 115 2.06% 4CL 111 1.99% F3'H/CYP75B 110 1.97% T16H 108 1.94% STR 89 1.6% LAC 85 1.53% CODM/T6ODM 81 1.45% CAS 80 1.44% NMT 78 1.4% PYKS 71 1.27% TPS 71 1.27% GES 65 1.17% IO 57 1.02% PAL 57 1.02% SMT1/SMT2/SMT3 56 1.01% FNS 51 0.92% CHS 50 0.9% CYP71 50 0.9% H6H 49 0.88% CYP90D1 48 0.86% TRI/TRII 47 0.84% HCT 43 0.77% GS 41 0.74% COMT 40 0.72% IFR 39 0.7% TAT 39 0.7% G8O/G8H 38 0.68% F3'5'H/CYP75A 35 0.63% CPD/CYP90A1 35 0.63% ANR 34 0.61% 16OMT 31 0.56% SGD 28 0.5% 7DLH 28 0.5% BBE 27 0.48% RAS 27 0.48% PMT 26 0.47% CYP51G1 26 0.47% COR 23 0.41% NCS 23 0.41% CSE 23 0.41% LAMT 22 0.39% SLS 22 0.39% CCR 22 0.39% DFR 19 0.34% BR6OX1/CYP85A1 19 0.34% F5H/CYP84A 18 0.32% CYP80B1 16 0.29% CPR 14 0.25% CCoAOMT 13 0.23% 8HGO 12 0.22% CNMT 11 0.2% TYDC_DDC 11 0.2% ROT3/CYP90C1 10 0.18% CYP719 9 0.16% DXS 9 0.16% MPO 8 0.14% AACT 8 0.14% ADC 7 0.13% ISY 6 0.11% GGPPS 6 0.11% TDC 5 0.09% HPPR 5 0.09% SQS/FDFT1 5 0.09% SQE 5 0.09% DWF7 4 0.07% SMO1/SMO2 4 0.07% DET2 4 0.07% HDR/IspH 4 0.07% FPPS 4 0.07% ODC 3 0.05% 6OMT_4OMT_SOMT 3 0.05% ANS/LDOX 3 0.05% CHI 3 0.05% DWF1 3 0.05% IDI 3 0.05% HMGS 3 0.05% HMGR 3 0.05% MVK 3 0.05% MVD 3 0.05% XMT_MXMT_DXMT 2 0.04% DWF5 2 0.04% MCT/IspD 2 0.04% PMK 2 0.04% CYP80F1 1 0.02% FLS 1 0.02% HYD1 1 0.02% FK 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 578 20 UGT (221) View species results
Alkaloid pathway 506 23 7DLGT (87) View species results
Phenylpropanoid pathway 406 12 POD (129) View species results
Flavonoid pathway 325 8 UFGT (202) View species results
Rosmarinic acid pathway 239 7 C4H (133) View species results
Steroid pathway 124 12 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2574 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 289 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Protein/Isoform Record Pathway Family Confidence Status Best Target
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g257200.p01 Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g260640.p01 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g261570.p01 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g262130.p01 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g273630.p01 Terpenoid CYP76 low borderline CYP76__00018__sp_Q69X58_C76M7_ORYSJ
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g274790.p01 Terpenoid CYP76 low borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g279840.p01 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g280590.p01 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU