Vitis berlandieri x rupestris (vitis_berlandieri_x_rupestris)
/
Imported from atlas release summary for Vitis berlandieri x rupestris.
2178
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2178
Candidate Genes
C4H
8.56%
C3'H/CYP98A
7.02%
CYP76
5.53%
IFS
5.28%
UGT
4.11%
BAHD
3.93%
7DLGT
3.84%
T3O
3.82%
Other Families
57.91%
More Families (97)
UFGT
213
3.82%
DWF4/CYP90B1
144
2.58%
F3H
135
2.42%
POD
134
2.4%
BR6OX2/CYP85A2
117
2.1%
CAD
115
2.06%
4CL
111
1.99%
F3'H/CYP75B
110
1.97%
T16H
108
1.94%
STR
89
1.6%
LAC
85
1.53%
CODM/T6ODM
81
1.45%
CAS
80
1.44%
NMT
78
1.4%
PYKS
71
1.27%
TPS
71
1.27%
GES
65
1.17%
IO
57
1.02%
PAL
57
1.02%
SMT1/SMT2/SMT3
56
1.01%
FNS
51
0.92%
CHS
50
0.9%
CYP71
50
0.9%
H6H
49
0.88%
CYP90D1
48
0.86%
TRI/TRII
47
0.84%
HCT
43
0.77%
GS
41
0.74%
COMT
40
0.72%
IFR
39
0.7%
TAT
39
0.7%
G8O/G8H
38
0.68%
F3'5'H/CYP75A
35
0.63%
CPD/CYP90A1
35
0.63%
ANR
34
0.61%
16OMT
31
0.56%
SGD
28
0.5%
7DLH
28
0.5%
BBE
27
0.48%
RAS
27
0.48%
PMT
26
0.47%
CYP51G1
26
0.47%
COR
23
0.41%
NCS
23
0.41%
CSE
23
0.41%
LAMT
22
0.39%
SLS
22
0.39%
CCR
22
0.39%
DFR
19
0.34%
BR6OX1/CYP85A1
19
0.34%
F5H/CYP84A
18
0.32%
CYP80B1
16
0.29%
CPR
14
0.25%
CCoAOMT
13
0.23%
8HGO
12
0.22%
CNMT
11
0.2%
TYDC_DDC
11
0.2%
ROT3/CYP90C1
10
0.18%
CYP719
9
0.16%
DXS
9
0.16%
MPO
8
0.14%
AACT
8
0.14%
ADC
7
0.13%
ISY
6
0.11%
GGPPS
6
0.11%
TDC
5
0.09%
HPPR
5
0.09%
SQS/FDFT1
5
0.09%
SQE
5
0.09%
DWF7
4
0.07%
SMO1/SMO2
4
0.07%
DET2
4
0.07%
HDR/IspH
4
0.07%
FPPS
4
0.07%
ODC
3
0.05%
6OMT_4OMT_SOMT
3
0.05%
ANS/LDOX
3
0.05%
CHI
3
0.05%
DWF1
3
0.05%
IDI
3
0.05%
HMGS
3
0.05%
HMGR
3
0.05%
MVK
3
0.05%
MVD
3
0.05%
XMT_MXMT_DXMT
2
0.04%
DWF5
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
CYP80F1
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 578 | 20 | UGT (221) | View species results |
| Alkaloid pathway | 506 | 23 | 7DLGT (87) | View species results |
| Phenylpropanoid pathway | 406 | 12 | POD (129) | View species results |
| Flavonoid pathway | 325 | 8 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 239 | 7 | C4H (133) | View species results |
| Steroid pathway | 124 | 12 | CAS (70) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2574 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 289 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070640.p01 | Terpenoid | UGT | medium | pass | UGT__00050__sp_O22822_U74F2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070650.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070660.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070670.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070680.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070690.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070700.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070710.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g070720.p01 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g073060.p01 | Terpenoid | UGT | medium | pass | UGT__00112__sp_Q9ZQG4_U73B5_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g073080.p01 | Terpenoid | UGT | medium | pass | UGT__00112__sp_Q9ZQG4_U73B5_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g076950.p01 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g077510.p01 | Terpenoid | UGT | medium | pass | UGT__00027__sp_D3UAG0_U71K1_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g077530.p01 | Terpenoid | UGT | medium | pass | UGT__00027__sp_D3UAG0_U71K1_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g077540.p01 | Terpenoid | UGT | medium | pass | UGT__00027__sp_D3UAG0_U71K1_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g077550.p01 | Terpenoid | UGT | medium | pass | UGT__00061__sp_P0DO49_U71K3_FRAAN |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078370.p01 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078380.p01 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078390.p01 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078400.p01 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078420.p01 | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078430.p01 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078440.p01 | Terpenoid | UGT | medium | pass | UGT__00021__sp_A7MAS5_75L17_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078460.p01 | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g078470.p01 | Terpenoid | UGT | medium | pass | UGT__00022__sp_B2XBQ5_85A19_PRUDU |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g080980.p01 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g080990.p01 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g081330.p01 | Terpenoid | UGT | low | borderline | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g082870.p01 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g083970.p01 | Terpenoid | UGT | medium | pass | UGT__00033__sp_F8WKW8_UGT9_GARJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g096370.p01 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g096380.p01 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g096400.p01 | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g098880.p01 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g098890.p01 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g098900.p01 | Terpenoid | UGT | low | borderline | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g099660.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g099670.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g099680.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g099690.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g099700.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g099710.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g111120.p01 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g111160.p01 | Terpenoid | UGT | medium | pass | UGT__00044__sp_K4GIP0_73C12_BARVU |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g114120.p01 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g117060.p01 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g117070.p01 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g117080.p01 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g117090.p01 | Terpenoid | UGT | medium | pass | UGT__00044__sp_K4GIP0_73C12_BARVU |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g117100.p01 | Terpenoid | UGT | medium | pass | UGT__00042__sp_K4GHR9_UGT1_BARVU |