PlantSME Plant secondary metabolism enzyme database

Vitis vinifera (vitis_vinifera)

Imported from atlas release summary for Vitis vinifera.

2428
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.51% Alkaloid pathway 23.89% Phenylpropanoid pathway 18.66% Flavonoid pathway 14.42% Rosmarinic acid pathway 8.03% Steroid pathway 7.5%
Family Distribution
C4H 6.06% C3'H/CYP98A 5.88% UGT 4.65% 7DLGT 4.27% UFGT 4.25% CYP76 4.24% BAHD 4.18% IFS 3.9%
Other Families 62.57%
More Families (98)
T3O 174 3.25% CAD 154 2.87% POD 143 2.67% F3H 141 2.63% CAS 136 2.54% DWF4/CYP90B1 136 2.54% TPS 117 2.18% GES 110 2.05% F3'H/CYP75B 108 2.01% LAC 105 1.96% STR 102 1.9% 4CL 99 1.85% CODM/T6ODM 96 1.79% BR6OX2/CYP85A2 84 1.57% PYKS 79 1.47% NMT 77 1.44% SMT1/SMT2/SMT3 64 1.19% PAL 60 1.12% IO 55 1.03% TRI/TRII 55 1.03% CHS 55 1.03% COMT 51 0.95% CYP71 50 0.93% G8O/G8H 49 0.91% ANR 49 0.91% GS 48 0.9% CYP90D1 47 0.88% H6H 46 0.86% 16OMT 41 0.76% IFR 38 0.71% SGD 36 0.67% 7DLH 34 0.63% T16H 34 0.63% F3'5'H/CYP75A 33 0.62% CSE 29 0.54% HCT 29 0.54% NCS 28 0.52% SLS 28 0.52% LAMT 28 0.52% CCR 27 0.5% CYP51G1 27 0.5% CPD/CYP90A1 27 0.5% COR 25 0.47% TAT 24 0.45% BBE 23 0.43% RAS 23 0.43% PMT 21 0.39% FNS 21 0.39% BR6OX1/CYP85A1 21 0.39% DFR 19 0.35% F5H/CYP84A 19 0.35% 8HGO 17 0.32% CNMT 11 0.21% CCoAOMT 10 0.19% AACT 10 0.19% MPO 9 0.17% ROT3/CYP90C1 9 0.17% DXS 9 0.17% HMGS 9 0.17% CYP80B1 8 0.15% ANS/LDOX 8 0.15% GGPPS 8 0.15% ISY 7 0.13% TYDC_DDC 7 0.13% XMT_MXMT_DXMT 6 0.11% CPR 6 0.11% SQE 6 0.11% CYP719 5 0.09% HPPR 5 0.09% SQS/FDFT1 5 0.09% DET2 5 0.09% FPPS 5 0.09% ADC 4 0.07% 6OMT_4OMT_SOMT 4 0.07% ODC 4 0.07% DWF1 4 0.07% DWF7 4 0.07% HDR/IspH 4 0.07% IDI 4 0.07% MVK 4 0.07% TDC 3 0.06% CHI 3 0.06% SMO1/SMO2 3 0.06% HMGR 3 0.06% MVD 3 0.06% DWF5 2 0.04% GPPS 2 0.04% MCT/IspD 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% FLS 1 0.02% HYD1 1 0.02% FK 1 0.02% CPI1 1 0.02% PMK 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 668 20 UGT (240) View species results
Alkaloid pathway 580 21 7DLGT (116) View species results
Phenylpropanoid pathway 453 12 POD (134) View species results
Flavonoid pathway 350 12 UFGT (217) View species results
Rosmarinic acid pathway 195 7 C4H (108) View species results
Steroid pathway 182 14 CAS (117) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2025 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 276 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
VIT_00s0208g00080.t01 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
VIT_00s0266g00010.t01 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0271g00030.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0271g00060.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0361g00060.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0372g00040.t01 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0372g00070.t01 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0375g00060.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0385g00020.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0392g00030.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0450g00010.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0572g00010.t01 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0572g00020.t01 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s0724g00010.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_00s2271g00010.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_04s0008g02980.t01 Steroid CAS medium pass CAS__00006__sp_Q2XPU6_CAS1_RICCO
VIT_04s0008g02990.t01 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
VIT_04s0008g03000.t01 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
VIT_04s0044g00250.t01 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
VIT_05s0094g00780.t01 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
VIT_07s0151g01040.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_07s0151g01070.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_08s0007g06860.t01 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
VIT_08s0056g00820.t01 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
VIT_09s0018g00630.t01 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
VIT_09s0054g01090.t01 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
VIT_09s0054g01110.t01 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
VIT_09s0054g01120.t01 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
VIT_09s0054g01130.t01 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
VIT_09s0054g01140.t01 Steroid CAS medium pass CAS__00001__sp_A0A125SXN3_LCA_LYCCL
VIT_09s0054g01160.t01 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
VIT_09s0054g01170.t01 Steroid CAS medium pass CAS__00008__sp_Q6BE25_CAS1_CUCPE
VIT_09s0054g01180.t01 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
VIT_09s0054g01200.t01 Steroid CAS medium pass CAS__00013__sp_Q9SLP9_CAS1_LUFAE
VIT_09s0054g01210.t01 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
VIT_09s0054g01220.t01 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
VIT_09s0054g01230.t01 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
VIT_09s0054g01250.t01 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
VIT_09s0054g01280.t01 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
VIT_09s0054g01290.t01 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
VIT_09s0054g01330.t01 Steroid CAS medium pass CAS__00013__sp_Q9SLP9_CAS1_LUFAE
VIT_09s0054g01340.t01 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
VIT_09s0054g01360.t01 Steroid CAS medium pass CAS__00011__sp_Q8W3Z4_CAS1_BETPL
VIT_09s0054g01370.t01 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
VIT_09s0054g01390.t01 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
VIT_09s0054g01410.t01 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
VIT_09s0054g01420.t01 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
VIT_09s0054g01440.t01 Steroid CAS medium pass CAS__00008__sp_Q6BE25_CAS1_CUCPE
VIT_09s0054g01470.t01 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
VIT_09s0054g01480.t01 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ