PlantSME Plant secondary metabolism enzyme database

Vitis vinifera (vitis_vinifera)

Imported from atlas release summary for Vitis vinifera.

2428
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.51% Alkaloid pathway 23.89% Phenylpropanoid pathway 18.66% Flavonoid pathway 14.42% Rosmarinic acid pathway 8.03% Steroid pathway 7.5%
Family Distribution
C4H 6.06% C3'H/CYP98A 5.88% UGT 4.65% 7DLGT 4.27% UFGT 4.25% CYP76 4.24% BAHD 4.18% IFS 3.9%
Other Families 62.57%
More Families (98)
T3O 174 3.25% CAD 154 2.87% POD 143 2.67% F3H 141 2.63% CAS 136 2.54% DWF4/CYP90B1 136 2.54% TPS 117 2.18% GES 110 2.05% F3'H/CYP75B 108 2.01% LAC 105 1.96% STR 102 1.9% 4CL 99 1.85% CODM/T6ODM 96 1.79% BR6OX2/CYP85A2 84 1.57% PYKS 79 1.47% NMT 77 1.44% SMT1/SMT2/SMT3 64 1.19% PAL 60 1.12% IO 55 1.03% TRI/TRII 55 1.03% CHS 55 1.03% COMT 51 0.95% CYP71 50 0.93% G8O/G8H 49 0.91% ANR 49 0.91% GS 48 0.9% CYP90D1 47 0.88% H6H 46 0.86% 16OMT 41 0.76% IFR 38 0.71% SGD 36 0.67% 7DLH 34 0.63% T16H 34 0.63% F3'5'H/CYP75A 33 0.62% CSE 29 0.54% HCT 29 0.54% NCS 28 0.52% SLS 28 0.52% LAMT 28 0.52% CCR 27 0.5% CYP51G1 27 0.5% CPD/CYP90A1 27 0.5% COR 25 0.47% TAT 24 0.45% BBE 23 0.43% RAS 23 0.43% PMT 21 0.39% FNS 21 0.39% BR6OX1/CYP85A1 21 0.39% DFR 19 0.35% F5H/CYP84A 19 0.35% 8HGO 17 0.32% CNMT 11 0.21% CCoAOMT 10 0.19% AACT 10 0.19% MPO 9 0.17% ROT3/CYP90C1 9 0.17% DXS 9 0.17% HMGS 9 0.17% CYP80B1 8 0.15% ANS/LDOX 8 0.15% GGPPS 8 0.15% ISY 7 0.13% TYDC_DDC 7 0.13% XMT_MXMT_DXMT 6 0.11% CPR 6 0.11% SQE 6 0.11% CYP719 5 0.09% HPPR 5 0.09% SQS/FDFT1 5 0.09% DET2 5 0.09% FPPS 5 0.09% ADC 4 0.07% 6OMT_4OMT_SOMT 4 0.07% ODC 4 0.07% DWF1 4 0.07% DWF7 4 0.07% HDR/IspH 4 0.07% IDI 4 0.07% MVK 4 0.07% TDC 3 0.06% CHI 3 0.06% SMO1/SMO2 3 0.06% HMGR 3 0.06% MVD 3 0.06% DWF5 2 0.04% GPPS 2 0.04% MCT/IspD 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% FLS 1 0.02% HYD1 1 0.02% FK 1 0.02% CPI1 1 0.02% PMK 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 668 20 UGT (240) View species results
Alkaloid pathway 580 21 7DLGT (116) View species results
Phenylpropanoid pathway 453 12 POD (134) View species results
Flavonoid pathway 350 12 UFGT (217) View species results
Rosmarinic acid pathway 195 7 C4H (108) View species results
Steroid pathway 182 14 CAS (117) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2025 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 276 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
VIT_04s0043g00880.t01 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VIT_04s0043g00900.t01 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VIT_04s0043g00920.t01 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VIT_04s0043g00930.t01 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VIT_07s0005g04480.t01 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
VIT_10s0003g04240.t01 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VIT_18s0076g00360.t01 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH