Vitis vinifera (vitis_vinifera)
Imported from atlas release summary for Vitis vinifera.
2428
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2428
Candidate Genes
C4H
6.06%
C3'H/CYP98A
5.88%
UGT
4.65%
7DLGT
4.27%
UFGT
4.25%
CYP76
4.24%
BAHD
4.18%
IFS
3.9%
Other Families
62.57%
More Families (98)
T3O
174
3.25%
CAD
154
2.87%
POD
143
2.67%
F3H
141
2.63%
CAS
136
2.54%
DWF4/CYP90B1
136
2.54%
TPS
117
2.18%
GES
110
2.05%
F3'H/CYP75B
108
2.01%
LAC
105
1.96%
STR
102
1.9%
4CL
99
1.85%
CODM/T6ODM
96
1.79%
BR6OX2/CYP85A2
84
1.57%
PYKS
79
1.47%
NMT
77
1.44%
SMT1/SMT2/SMT3
64
1.19%
PAL
60
1.12%
IO
55
1.03%
TRI/TRII
55
1.03%
CHS
55
1.03%
COMT
51
0.95%
CYP71
50
0.93%
G8O/G8H
49
0.91%
ANR
49
0.91%
GS
48
0.9%
CYP90D1
47
0.88%
H6H
46
0.86%
16OMT
41
0.76%
IFR
38
0.71%
SGD
36
0.67%
7DLH
34
0.63%
T16H
34
0.63%
F3'5'H/CYP75A
33
0.62%
CSE
29
0.54%
HCT
29
0.54%
NCS
28
0.52%
SLS
28
0.52%
LAMT
28
0.52%
CCR
27
0.5%
CYP51G1
27
0.5%
CPD/CYP90A1
27
0.5%
COR
25
0.47%
TAT
24
0.45%
BBE
23
0.43%
RAS
23
0.43%
PMT
21
0.39%
FNS
21
0.39%
BR6OX1/CYP85A1
21
0.39%
DFR
19
0.35%
F5H/CYP84A
19
0.35%
8HGO
17
0.32%
CNMT
11
0.21%
CCoAOMT
10
0.19%
AACT
10
0.19%
MPO
9
0.17%
ROT3/CYP90C1
9
0.17%
DXS
9
0.17%
HMGS
9
0.17%
CYP80B1
8
0.15%
ANS/LDOX
8
0.15%
GGPPS
8
0.15%
ISY
7
0.13%
TYDC_DDC
7
0.13%
XMT_MXMT_DXMT
6
0.11%
CPR
6
0.11%
SQE
6
0.11%
CYP719
5
0.09%
HPPR
5
0.09%
SQS/FDFT1
5
0.09%
DET2
5
0.09%
FPPS
5
0.09%
ADC
4
0.07%
6OMT_4OMT_SOMT
4
0.07%
ODC
4
0.07%
DWF1
4
0.07%
DWF7
4
0.07%
HDR/IspH
4
0.07%
IDI
4
0.07%
MVK
4
0.07%
TDC
3
0.06%
CHI
3
0.06%
SMO1/SMO2
3
0.06%
HMGR
3
0.06%
MVD
3
0.06%
DWF5
2
0.04%
GPPS
2
0.04%
MCT/IspD
2
0.04%
MDS/IspF
2
0.04%
CYP80F1
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
PMK
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 668 | 20 | UGT (240) | View species results |
| Alkaloid pathway | 580 | 21 | 7DLGT (116) | View species results |
| Phenylpropanoid pathway | 453 | 12 | POD (134) | View species results |
| Flavonoid pathway | 350 | 12 | UFGT (217) | View species results |
| Rosmarinic acid pathway | 195 | 7 | C4H (108) | View species results |
| Steroid pathway | 182 | 14 | CAS (117) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2025 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 276 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| VIT_09s0002g03580.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g03630.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g03640.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05360.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05370.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05380.t01 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05400.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05410.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05440.t01 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05490.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05510.t01 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05530.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05560.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05570.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05590.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g05600.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g06930.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_09s0002g06940.t01 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_10s0042g00010.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_10s0042g00020.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_10s0042g00030.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_10s0042g00050.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_10s0071g00010.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_10s0071g00020.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_10s0071g00250.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_11s0016g00860.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_11s0016g00870.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_11s0016g00880.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_11s0016g04540.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_11s0016g04590.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_12s0028g02360.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_13s0019g04600.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_13s0067g03750.t01 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_13s0074g00070.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_13s0074g00080.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_13s0074g00660.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_13s0074g00680.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_13s0074g00690.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_13s0074g00700.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_14s0060g00470.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_16s0039g00010.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_16s0050g01620.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_17s0000g02200.t01 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_17s0000g04580.t01 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| VIT_17s0000g04590.t01 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| VIT_17s0000g04600.t01 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| VIT_17s0000g04610.t01 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| VIT_18s0072g01220.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_18s0166g00080.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| VIT_19s0014g01540.t01 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |