PlantSME Plant secondary metabolism enzyme database

Ziziphus jujuba (ziziphus_jujuba)

Imported from atlas release summary for Ziziphus jujuba.

2544
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.41% Alkaloid pathway 20.72% Phenylpropanoid pathway 16.75% Flavonoid pathway 15.88% Rosmarinic acid pathway 8.77% Steroid pathway 6.49%
Family Distribution
BAHD 6.47% UGT 5.74% C4H 5.66% 7DLGT 5.54% UFGT 5.4% C3'H/CYP98A 5.4% IFS 3.88% T3O 3.25%
Other Families 58.66%
More Families (96)
CYP76 189 3.2% POD 188 3.18% 4CL 174 2.95% F3H 150 2.54% NMT 119 2.02% DWF4/CYP90B1 115 1.95% CAD 114 1.93% F3'H/CYP75B 93 1.57% STR 91 1.54% BR6OX2/CYP85A2 91 1.54% CODM/T6ODM 90 1.52% SMT1/SMT2/SMT3 85 1.44% CAS 82 1.39% H6H 74 1.25% HCT 74 1.25% RAS 70 1.19% TRI/TRII 67 1.13% IFR 66 1.12% COMT 61 1.03% CYP90D1 61 1.03% CYP71 59 1.0% GS 55 0.93% LAMT 54 0.91% ANR 54 0.91% PYKS 52 0.88% TAT 49 0.83% TPS 49 0.83% PMT 48 0.81% LAC 48 0.81% 16OMT 47 0.8% SGD 46 0.78% GES 45 0.76% T16H 43 0.73% IO 42 0.71% NCS 40 0.68% CCR 35 0.59% 7DLH 33 0.56% SLS 31 0.52% CSE 31 0.52% BBE 30 0.51% 8HGO 25 0.42% DFR 25 0.42% COR 24 0.41% CYP51G1 24 0.41% G8O/G8H 22 0.37% F3'5'H/CYP75A 21 0.36% BR6OX1/CYP85A1 21 0.36% F5H/CYP84A 19 0.32% CPD/CYP90A1 19 0.32% CCoAOMT 18 0.3% FNS 16 0.27% ROT3/CYP90C1 16 0.27% PAL 15 0.25% AACT 15 0.25% CNMT 13 0.22% HPPR 13 0.22% ANS/LDOX 12 0.2% CHS 12 0.2% MVK 12 0.2% TYDC_DDC 11 0.19% GGPPS 11 0.19% MPO 10 0.17% DXS 10 0.17% CPR 9 0.15% SQE 9 0.15% ISY 8 0.14% MCT/IspD 8 0.14% CHI 7 0.12% DET2 7 0.12% FPPS 7 0.12% 6OMT_4OMT_SOMT 6 0.1% CYP80B1 6 0.1% SQS/FDFT1 6 0.1% CMK/IspE 6 0.1% CYP719 5 0.08% HMGR 5 0.08% XMT_MXMT_DXMT 4 0.07% SMO1/SMO2 4 0.07% HYD1 4 0.07% HMGS 4 0.07% MVD 4 0.07% FLS 3 0.05% IDI 3 0.05% TDC 2 0.03% CYP80F1 2 0.03% CPI1 2 0.03% DWF5 2 0.03% FK 2 0.03% PMK 2 0.03% MDS/IspF 2 0.03% ODC 1 0.02% ADC 1 0.02% DWF1 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 799 20 UGT (325) View species results
Alkaloid pathway 527 22 7DLGT (142) View species results
Phenylpropanoid pathway 426 11 POD (181) View species results
Flavonoid pathway 404 12 UFGT (307) View species results
Rosmarinic acid pathway 223 7 C4H (93) View species results
Steroid pathway 165 12 CAS (76) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1986 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 526 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
XP_015868075.1[Ziziphus Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
XP_015868076.1[Ziziphus Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
XP_015873787.1[Ziziphus Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
XP_015880481.1[Ziziphus Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
XP_015880681.1[Ziziphus Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
XP_015888529.1[Ziziphus Terpenoid FPPS medium borderline FPPS__00003__sp_O04046_GGPP2_ARATH
XP_015889607.1[Ziziphus Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC