PlantSME Plant secondary metabolism enzyme database

Zostera marina (zostera_marina)

Imported from atlas release summary for Zostera marina.

701
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.96% Phenylpropanoid pathway 24.11% Alkaloid pathway 17.4% Flavonoid pathway 12.98% Rosmarinic acid pathway 9.7% Steroid pathway 7.85%
Family Distribution
BAHD 8.48% C4H 6.16% POD 5.52% C3'H/CYP98A 5.4% 4CL 4.53% UGT 3.6% IFS 3.14% CYP76 3.14%
Other Families 60.02%
More Families (92)
T3O 52 3.02% NMT 50 2.91% UFGT 46 2.67% 7DLGT 42 2.44% STR 42 2.44% DWF4/CYP90B1 39 2.27% CSE 37 2.15% F3'H/CYP75B 36 2.09% PYKS 32 1.86% CYP71 32 1.86% F3H 31 1.8% SMT1/SMT2/SMT3 27 1.57% IFR 26 1.51% BR6OX2/CYP85A2 25 1.45% CODM/T6ODM 21 1.22% CAD 21 1.22% RAS 19 1.1% PAL 18 1.05% CAS 17 0.99% HCT 16 0.93% CHS 15 0.87% CYP90D1 15 0.87% TRI/TRII 14 0.81% G8O/G8H 14 0.81% H6H 14 0.81% GS 13 0.76% CNMT 12 0.7% ANR 12 0.7% CCR 12 0.7% PMT 10 0.58% FNS 10 0.58% F3'5'H/CYP75A 10 0.58% T16H 9 0.52% DFR 9 0.52% LAC 9 0.52% CPR 9 0.52% DWF7 9 0.52% 8HGO 8 0.46% IO 8 0.46% 7DLH 8 0.46% ANS/LDOX 8 0.46% TAT 8 0.46% CPD/CYP90A1 8 0.46% FPPS 8 0.46% NCS 7 0.41% SLS 7 0.41% F5H/CYP84A 7 0.41% BR6OX1/CYP85A1 7 0.41% CYP51G1 6 0.35% CYP719 5 0.29% SGD 5 0.29% TYDC_DDC 5 0.29% COR 5 0.29% CYP80B1 5 0.29% HPPR 5 0.29% ROT3/CYP90C1 5 0.29% AACT 5 0.29% GES 4 0.23% CHI 4 0.23% COMT 4 0.23% SMO1/SMO2 4 0.23% DET2 4 0.23% GGPPS 4 0.23% MVK 4 0.23% TDC 3 0.17% LAMT 3 0.17% ODC 3 0.17% CCoAOMT 3 0.17% SQS/FDFT1 3 0.17% DWF1 3 0.17% MCT/IspD 3 0.17% MPO 2 0.12% 16OMT 2 0.12% TPS 2 0.12% PMK 2 0.12% MDS/IspF 2 0.12% IDI 2 0.12% CMK/IspE 2 0.12% DXS 2 0.12% ADC 1 0.06% ISY 1 0.06% BBE 1 0.06% DWF5 1 0.06% CPI1 1 0.06% HYD1 1 0.06% SQE 1 0.06% HMGR 1 0.06% MVD 1 0.06% HDS/IspG 1 0.06% HDR/IspH 1 0.06% HMGS 1 0.06% DXR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 196 19 BAHD (97) View species results
Phenylpropanoid pathway 169 11 POD (89) View species results
Alkaloid pathway 122 17 NMT (31) View species results
Flavonoid pathway 91 7 UFGT (41) View species results
Rosmarinic acid pathway 68 7 4CL (18) View species results
Steroid pathway 55 10 SMT1/SMT2/SMT3 (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 605 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 181 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Zmar01G0004060.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Zmar02G0006360.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Zmar03G0020750.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Zmar03G0036820.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Zmar05G0025280.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Zmar06G0025650.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Zmar06G0029350.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA