PlantSME Plant secondary metabolism enzyme database
4CL

4CL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family 4CL.

Lineage Coverage
Detected in 774 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 25907 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 25910 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 25914 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
Agluscaffold124360_cov1070037440 alnus_glutinosa Agluscaffold124360_cov1070037440
Agluscaffold124360_cov1070037450 alnus_glutinosa Agluscaffold124360_cov1070037450
Agluscaffold1251_cov1000038310 alnus_glutinosa Agluscaffold1251_cov1000038310
Agluscaffold12995_cov1030045010 alnus_glutinosa Agluscaffold12995_cov1030045010
Agluscaffold14475_cov1060062680 alnus_glutinosa Agluscaffold14475_cov1060062680
Agluscaffold14811_cov1090067780 alnus_glutinosa Agluscaffold14811_cov1090067780
Agluscaffold14907_cov1050068740 alnus_glutinosa Agluscaffold14907_cov1050068740
Agluscaffold14928_cov1050068990 alnus_glutinosa Agluscaffold14928_cov1050068990
Agluscaffold150199_cov980069690 alnus_glutinosa Agluscaffold150199_cov980069690
Agluscaffold169461_cov1070089000 alnus_glutinosa Agluscaffold169461_cov1070089000
Agluscaffold17727_cov800097090 alnus_glutinosa Agluscaffold17727_cov800097090
Agluscaffold19263_cov960110180 alnus_glutinosa Agluscaffold19263_cov960110180
Agluscaffold19488_cov1050112560 alnus_glutinosa Agluscaffold19488_cov1050112560
Agluscaffold2219_cov990135190 alnus_glutinosa Agluscaffold2219_cov990135190
Agluscaffold3033_cov1010183290 alnus_glutinosa Agluscaffold3033_cov1010183290
Agluscaffold3033_cov1010183300 alnus_glutinosa Agluscaffold3033_cov1010183300
Agluscaffold33399_cov960200950 alnus_glutinosa Agluscaffold33399_cov960200950
Agluscaffold35240_cov900210790 alnus_glutinosa Agluscaffold35240_cov900210790
Agluscaffold35240_cov900210800 alnus_glutinosa Agluscaffold35240_cov900210800
Agluscaffold41143_cov1070235390 alnus_glutinosa Agluscaffold41143_cov1070235390
Agluscaffold424421_cov990245560 alnus_glutinosa Agluscaffold424421_cov990245560
Agluscaffold424798_cov1090262240 alnus_glutinosa Agluscaffold424798_cov1090262240
Agluscaffold425460_cov1020269200 alnus_glutinosa Agluscaffold425460_cov1020269200
Agluscaffold425597_cov1050272440 alnus_glutinosa Agluscaffold425597_cov1050272440
Agluscaffold4702_cov890298770 alnus_glutinosa Agluscaffold4702_cov890298770
Agluscaffold5054_cov910312820 alnus_glutinosa Agluscaffold5054_cov910312820
Agluscaffold51559_cov1010315650 alnus_glutinosa Agluscaffold51559_cov1010315650
Agluscaffold51846_cov1040316770 alnus_glutinosa Agluscaffold51846_cov1040316770
Agluscaffold55195_cov1010327620 alnus_glutinosa Agluscaffold55195_cov1010327620
Agluscaffold5680_cov1070333390 alnus_glutinosa Agluscaffold5680_cov1070333390