PlantSME Plant secondary metabolism enzyme database
IO

IO

Atlas summary family IO.

Lineage Coverage
Detected in 557 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Triticum aestivum
Triticum turgidum
Papaver setigerum
Lonicera japonica
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 1721 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
FnilGWHABKC000000050180290.1 fragaria_nilgerrensis FnilGWHABKC000000050180290.1
FnilGWHABKC000000050202470.1 fragaria_nilgerrensis FnilGWHABKC000000050202470.1
FnilGWHABKC000000070262630.1 fragaria_nilgerrensis FnilGWHABKC000000070262630.1
FnilGWHABKC000000070263740.1 fragaria_nilgerrensis FnilGWHABKC000000070263740.1
fragaria_nipponica_maker-chr1-augustus-gene-80.87-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr1-augustus-gene-80.87-mRNA-1
fragaria_nipponica_maker-chr1-augustus-gene-87.59-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr1-augustus-gene-87.59-mRNA-1
fragaria_nubicola_evm.model.ctg150.139 fragaria_nubicola fragaria_nubicola_evm.model.ctg150.139
fragaria_nubicola_evm.model.ctg151.72 fragaria_nubicola fragaria_nubicola_evm.model.ctg151.72
fragaria_nubicola_evm.model.ctg169.398 fragaria_nubicola fragaria_nubicola_evm.model.ctg169.398
fragaria_nubicola_evm.model.ctg66.30 fragaria_nubicola fragaria_nubicola_evm.model.ctg66.30
Fves01G0014140.1 fragaria_vesca Fves01G0014140.1
Fves05G0003540.1 fragaria_vesca Fves05G0003540.1
fragaria_x_ananassa_augustus_masked-Fvb7-1-processed-gene-14.5-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_augustus_masked-Fvb7-1-processed-gene-14.5-mRNA-1
fragaria_x_ananassa_maker-Fvb1-1-augustus-gene-209.40-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb1-1-augustus-gene-209.40-mRNA-1
fragaria_x_ananassa_maker-Fvb1-3-snap-gene-75.65-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb1-3-snap-gene-75.65-mRNA-1
fragaria_x_ananassa_maker-Fvb1-4-snap-gene-59.63-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb1-4-snap-gene-59.63-mRNA-1
fragaria_x_ananassa_maker-Fvb5-1-augustus-gene-16.49-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-1-augustus-gene-16.49-mRNA-1
fragaria_x_ananassa_maker-Fvb5-2-snap-gene-106.56-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-2-snap-gene-106.56-mRNA-1
fragaria_x_ananassa_maker-Fvb5-3-snap-gene-192.40-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-3-snap-gene-192.40-mRNA-1
fragaria_x_ananassa_maker-Fvb5-4-snap-gene-204.26-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-4-snap-gene-204.26-mRNA-1
fragaria_x_ananassa_maker-Fvb6-4-snap-gene-116.26-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb6-4-snap-gene-116.26-mRNA-1
fragaria_x_ananassa_maker-Fvb7-1-snap-gene-221.53-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-1-snap-gene-221.53-mRNA-1
fragaria_x_ananassa_maker-Fvb7-3-snap-gene-71.58-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-3-snap-gene-71.58-mRNA-1
FexcContig17050065250.1 fraxinus_excelsior FexcContig17050065250.1
FexcContig17050065250.3 fraxinus_excelsior FexcContig17050065250.3
FexcContig7850340160.1 fraxinus_excelsior FexcContig7850340160.1
fraxinus_pennsylvanica_Fp_g39593 fraxinus_pennsylvanica fraxinus_pennsylvanica_Fp_g39593
Fmon2605630005880 frullania_moniliata Fmon2605630005880
Fmon4013770075460 frullania_moniliata Fmon4013770075460
Fhygscaffold_140078990 funaria_hygrometrica Fhygscaffold_140078990