PlantSME Plant secondary metabolism enzyme database
IO

IO

Atlas summary family IO.

Lineage Coverage
Detected in 557 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Triticum aestivum
Triticum turgidum
Papaver setigerum
Lonicera japonica
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 1721 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
fortunella_hindsii_sjg038460.1 fortunella_hindsii fortunella_hindsii_sjg038460.1
fortunella_hindsii_sjg072630.1 fortunella_hindsii fortunella_hindsii_sjg072630.1
fortunella_hindsii_sjg319010.1 fortunella_hindsii fortunella_hindsii_sjg319010.1
Fossombronia10200005350 fossombronia Fossombronia10200005350
Fossombronia1240063510 fossombronia Fossombronia1240063510
Fossombronia2820164560 fossombronia Fossombronia2820164560
Fossombronia3000166710 fossombronia Fossombronia3000166710
FanaFAN_r2.3ch00008940 fragaria_ananassa FanaFAN_r2.3ch00008940
FanaFAN_r2.3ch1Ava0360590 fragaria_ananassa FanaFAN_r2.3ch1Ava0360590
FanaFAN_r2.3ch1X2a0475600 fragaria_ananassa FanaFAN_r2.3ch1X2a0475600
FanaFAN_r2.3ch1X2b0486570 fragaria_ananassa FanaFAN_r2.3ch1X2b0486570
FanaFAN_r2.3ch1X2b0487570 fragaria_ananassa FanaFAN_r2.3ch1X2b0487570
FanaFAN_r2.3ch5Ava1040960 fragaria_ananassa FanaFAN_r2.3ch5Ava1040960
FanaFAN_r2.3ch5Avb1086060 fragaria_ananassa FanaFAN_r2.3ch5Avb1086060
FanaFAN_r2.3ch6X1a1391760 fragaria_ananassa FanaFAN_r2.3ch6X1a1391760
FanaFAN_r2.3ch6X1a1393760 fragaria_ananassa FanaFAN_r2.3ch6X1a1393760
FanaFAN_r2.3ch7Bia1557900 fragaria_ananassa FanaFAN_r2.3ch7Bia1557900
FanaFAN_r2.3ch7Bib1578260 fragaria_ananassa FanaFAN_r2.3ch7Bib1578260
fragaria_chiloensis_maker-1A-augustus-gene-67.15-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1A-augustus-gene-67.15-mRNA-1
fragaria_chiloensis_maker-1C-augustus-gene-56.2-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1C-augustus-gene-56.2-mRNA-1
fragaria_chiloensis_maker-1C-augustus-gene-63.62-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1C-augustus-gene-63.62-mRNA-1
fragaria_chiloensis_maker-1D-augustus-gene-195.39-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1D-augustus-gene-195.39-mRNA-1
fragaria_chiloensis_maker-3A-exonerate_est2genome-gene-176.19-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-3A-exonerate_est2genome-gene-176.19-mRNA-1
fragaria_chiloensis_maker-3C-augustus-gene-278.16-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-3C-augustus-gene-278.16-mRNA-1
fragaria_chiloensis_maker-5A-augustus-gene-16.101-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5A-augustus-gene-16.101-mRNA-1
fragaria_iinumae_evm.model.scaf_66.240 fragaria_iinumae fragaria_iinumae_evm.model.scaf_66.240
fragaria_iinumae_evm.model.scaf_79.1099 fragaria_iinumae fragaria_iinumae_evm.model.scaf_79.1099
fragaria_iinumae_evm.model.scaf_79.1206 fragaria_iinumae fragaria_iinumae_evm.model.scaf_79.1206
fragaria_mandshurica_evm.model.chr5.160 fragaria_mandshurica fragaria_mandshurica_evm.model.chr5.160
fragaria_mandshurica_evm.model.chr5.280 fragaria_mandshurica fragaria_mandshurica_evm.model.chr5.280