PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr3.1222 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr3.785 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr5.922 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr6.2264 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr6.2265 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr6.3956 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr7.1178 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr7.1291 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr7.1417 Alkaloid 16OMT low borderline
fragaria_mandshurica_evm.model.chr7.2780 Alkaloid 16OMT medium borderline
fragaria_mandshurica_evm.model.chr2.1139 Alkaloid 6OMT_4OMT_SOMT medium borderline
fragaria_mandshurica_evm.model.chr2.1142 Alkaloid 6OMT_4OMT_SOMT medium borderline
fragaria_mandshurica_evm.model.chr4.3137 Alkaloid 6OMT_4OMT_SOMT low borderline
fragaria_mandshurica_evm.model.chr5.1569 Alkaloid 6OMT_4OMT_SOMT medium borderline
fragaria_mandshurica_evm.model.chr0.1239 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr0.244 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr0.869 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr0.870 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr0.871 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr0.872 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1064 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr1.1066 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1068 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr1.1367 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1430 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1683 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1868 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1870 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1871 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.1872 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr1.2034 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr1.506 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.123 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.260 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.262 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.3061 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.313 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.314 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.315 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.316 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.317 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr2.320 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr2.321 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.322 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr2.324 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr2.70 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr2.71 Alkaloid 7DLGT medium pass
fragaria_mandshurica_evm.model.chr3.1091 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr3.1093 Alkaloid 7DLGT low borderline
fragaria_mandshurica_evm.model.chr3.1094 Alkaloid 7DLGT low borderline