PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.3% Alkaloid pathway 23.01% Phenylpropanoid pathway 21.5% Flavonoid pathway 12.49% Rosmarinic acid pathway 7.27% Steroid pathway 6.43%
Family Distribution
BAHD 6.6% C4H 5.73% C3'H/CYP98A 4.9% UGT 4.5% 4CL 4.1% 7DLGT 3.93% POD 3.77% UFGT 3.67%
Other Families 62.81%
More Families (96)
IFS 103 3.43% CYP76 102 3.4% T3O 92 3.07% F3H 88 2.93% NMT 84 2.8% F3'H/CYP75B 55 1.83% CAD 55 1.83% STR 54 1.8% H6H 52 1.73% DWF4/CYP90B1 52 1.73% CODM/T6ODM 49 1.63% BR6OX2/CYP85A2 48 1.6% LAC 47 1.57% SMT1/SMT2/SMT3 45 1.5% CSE 44 1.47% GS 39 1.3% TRI/TRII 38 1.27% CAS 38 1.27% IFR 32 1.07% SGD 28 0.93% CYP90D1 28 0.93% IO 27 0.9% ANR 27 0.9% TPS 27 0.9% COMT 25 0.83% T16H 24 0.8% GES 24 0.8% HCT 24 0.8% RAS 24 0.8% CYP71 24 0.8% PMT 23 0.77% BR6OX1/CYP85A1 23 0.77% PYKS 21 0.7% G8O/G8H 20 0.67% CCR 20 0.67% 7DLH 19 0.63% F3'5'H/CYP75A 18 0.6% LAMT 17 0.57% F5H/CYP84A 16 0.53% PAL 15 0.5% TAT 15 0.5% COR 14 0.47% NCS 13 0.43% SLS 13 0.43% CPD/CYP90A1 12 0.4% FNS 11 0.37% CCoAOMT 11 0.37% MPO 10 0.33% 16OMT 10 0.33% DFR 10 0.33% SQE 10 0.33% ISY 9 0.3% 8HGO 9 0.3% ANS/LDOX 9 0.3% FPPS 9 0.3% ROT3/CYP90C1 8 0.27% CNMT 7 0.23% CHS 7 0.23% DET2 6 0.2% CYP51G1 6 0.2% GGPPS 6 0.2% AACT 6 0.2% HMGR 6 0.2% BBE 5 0.17% HPPR 5 0.17% SQS/FDFT1 5 0.17% 6OMT_4OMT_SOMT 4 0.13% CYP719 4 0.13% CPR 4 0.13% TDC 3 0.1% TYDC_DDC 3 0.1% ADC 3 0.1% SMO1/SMO2 3 0.1% DXS 3 0.1% MVK 3 0.1% DXR 3 0.1% PMK 3 0.1% IDI 3 0.1% MVD 3 0.1% CYP80B1 2 0.07% CHI 2 0.07% DWF1 2 0.07% ODC 1 0.03% CYP80F1 1 0.03% FLS 1 0.03% DWF7 1 0.03% HYD1 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF5 1 0.03% HDR/IspH 1 0.03% MCT/IspD 1 0.03% HDS/IspG 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr2.155 Flavonoid DFR low borderline
fragaria_mandshurica_evm.model.chr2.3368 Flavonoid DFR medium borderline
fragaria_mandshurica_evm.model.chr2.622 Flavonoid DFR medium borderline
fragaria_mandshurica_evm.model.chr5.105 Flavonoid DFR medium borderline
fragaria_mandshurica_evm.model.chr5.2008 Flavonoid DFR medium borderline
fragaria_mandshurica_evm.model.chr5.3177 Flavonoid DFR medium borderline
fragaria_mandshurica_evm.model.chr5.3184 Flavonoid DFR medium borderline
fragaria_mandshurica_evm.model.chr5.3185 Flavonoid DFR low borderline
fragaria_mandshurica_evm.model.chr5.494 Flavonoid DFR low borderline
fragaria_mandshurica_evm.model.chr6.244 Flavonoid DFR low borderline