PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
fragaria_mandshurica_evm.model.chr0.340 Terpenoid TPS medium pass TPS__00054__sp_A0A7J6HK32_TS9FN_CANSA
fragaria_mandshurica_evm.model.chr1.619 Terpenoid TPS medium pass TPS__00054__sp_A0A7J6HK32_TS9FN_CANSA
fragaria_mandshurica_evm.model.chr2.1761 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
fragaria_mandshurica_evm.model.chr2.1829 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
fragaria_mandshurica_evm.model.chr3.1296 Terpenoid TPS medium pass TPS__00029__sp_A0A1W6QDJ1_CPS4_ISORU
fragaria_mandshurica_evm.model.chr3.1297 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
fragaria_mandshurica_evm.model.chr3.1298 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
fragaria_mandshurica_evm.model.chr3.1299 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
fragaria_mandshurica_evm.model.chr3.1300 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
fragaria_mandshurica_evm.model.chr3.139 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
fragaria_mandshurica_evm.model.chr3.2447 Terpenoid TPS medium pass TPS__00086__sp_E2E2N8_GCDS_ORIVU
fragaria_mandshurica_evm.model.chr3.259 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
fragaria_mandshurica_evm.model.chr3.2933 Terpenoid TPS medium pass TPS__00046__sp_A0A4Y5QVX6_T20CT_CANSA
fragaria_mandshurica_evm.model.chr3.2935 Terpenoid TPS medium pass TPS__00046__sp_A0A4Y5QVX6_T20CT_CANSA
fragaria_mandshurica_evm.model.chr3.2945 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
fragaria_mandshurica_evm.model.chr3.2954 Terpenoid TPS medium pass TPS__00018__sp_A0A1V0QSF3_TS8FN_CANSA
fragaria_mandshurica_evm.model.chr3.3015 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
fragaria_mandshurica_evm.model.chr5.2417 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
fragaria_mandshurica_evm.model.chr6.1121 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
fragaria_mandshurica_evm.model.chr6.2020 Terpenoid TPS low borderline TPS__00054__sp_A0A7J6HK32_TS9FN_CANSA
fragaria_mandshurica_evm.model.chr6.2040 Terpenoid TPS medium pass TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA
fragaria_mandshurica_evm.model.chr6.3867 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
fragaria_mandshurica_evm.model.chr6.3868 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
fragaria_mandshurica_evm.model.chr6.3869 Terpenoid TPS medium pass TPS__00111__sp_G0Y7D2_TPS2_LITCU
fragaria_mandshurica_evm.model.chr6.3870 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
fragaria_mandshurica_evm.model.chr6.4014 Terpenoid TPS medium pass TPS__00111__sp_G0Y7D2_TPS2_LITCU
fragaria_mandshurica_evm.model.chr6.509 Terpenoid TPS medium pass TPS__00006__sp_A0A142BX70_TPS1_XANST