PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status Best Target
fragaria_mandshurica_evm.model.chr1.2090 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr1.2200 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr1.524 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr2.1003 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr2.1094 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr2.3153 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr2.3353 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr3.2534 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr3.3219 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr3.3300 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr3.3577 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr3.613 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr3.615 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr4.1464 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr4.1997 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr4.2016 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr5.1835 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr5.2006 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr6.1438 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr6.411 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr6.4730 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
fragaria_mandshurica_evm.model.chr7.1773 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr7.1795 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
fragaria_mandshurica_evm.model.chr7.1859 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC