PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.253 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr1.1699 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr1.2227 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr1.2405 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr1.2457 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr1.2743 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr1.901 Phenylpropanoid CSE low borderline
fragaria_mandshurica_evm.model.chr1.905 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr2.1234 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr2.1251 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr2.2085 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr2.2803 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr2.305 Phenylpropanoid CSE low borderline
fragaria_mandshurica_evm.model.chr2.3286 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr2.3293 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr2.640 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.1032 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.1307 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.1592 Phenylpropanoid CSE low borderline
fragaria_mandshurica_evm.model.chr3.2882 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.3184 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.413 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.691 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.716 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.743 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr3.744 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr5.1684 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr5.1685 Phenylpropanoid CSE low borderline
fragaria_mandshurica_evm.model.chr5.1686 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr5.2081 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr5.693 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.1861 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.1871 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.2216 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.2217 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.2218 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.2227 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.463 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr6.684 Phenylpropanoid CSE low borderline
fragaria_mandshurica_evm.model.chr7.264 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr7.360 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr7.745 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr7.922 Phenylpropanoid CSE medium pass
fragaria_mandshurica_evm.model.chr7.948 Phenylpropanoid CSE medium pass