PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.1239 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr0.244 Flavonoid UFGT low borderline
fragaria_mandshurica_evm.model.chr0.869 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr0.870 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr0.871 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr0.872 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr1.1064 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr1.1066 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr1.1068 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr1.1367 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr1.1430 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr1.1683 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr1.1868 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr1.1870 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr1.1871 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr1.1872 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr1.1970 Flavonoid UFGT low borderline
fragaria_mandshurica_evm.model.chr1.2034 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr1.506 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr2.260 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.262 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.3061 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.313 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.314 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.315 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.316 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.317 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr2.320 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr2.321 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.322 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.324 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr2.70 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr2.71 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr2.915 Flavonoid UFGT low borderline
fragaria_mandshurica_evm.model.chr3.1091 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.1094 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr3.1206 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr3.1208 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.1416 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.1593 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr3.1867 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr3.2590 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.2591 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr3.2593 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr3.3216 Flavonoid UFGT medium pass
fragaria_mandshurica_evm.model.chr3.629 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.709 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.777 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.779 Flavonoid UFGT high pass
fragaria_mandshurica_evm.model.chr3.893 Flavonoid UFGT high pass