PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.340 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr1.619 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr2.1761 Alkaloid GES low borderline
fragaria_mandshurica_evm.model.chr2.1829 Alkaloid GES low borderline
fragaria_mandshurica_evm.model.chr3.1299 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr3.1300 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr3.139 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr3.259 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr3.2933 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr3.2935 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr3.2945 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr3.2954 Alkaloid GES low borderline
fragaria_mandshurica_evm.model.chr3.3015 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr5.2417 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.1121 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.2020 Alkaloid GES low borderline
fragaria_mandshurica_evm.model.chr6.2040 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.3191 Alkaloid GES low borderline
fragaria_mandshurica_evm.model.chr6.3867 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.3868 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.3869 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.3870 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.4014 Alkaloid GES medium pass
fragaria_mandshurica_evm.model.chr6.509 Alkaloid GES medium pass