PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
Reset
Gene Pathway Family Confidence Status Best Target
fragaria_mandshurica_evm.model.chr0.142 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr1.1400 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr1.183 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr1.2532 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr2.1000 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr2.1152 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr2.1432 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr2.1662 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr2.1692 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr2.339 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr2.386 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr2.387 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr2.403 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr2.975 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr2.976_evm.model.chr2.977 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr3.1566 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr3.2364 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
fragaria_mandshurica_evm.model.chr3.2378 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
fragaria_mandshurica_evm.model.chr3.2646 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr3.3119 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
fragaria_mandshurica_evm.model.chr3.3204 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
fragaria_mandshurica_evm.model.chr4.2187 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr5.1561 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
fragaria_mandshurica_evm.model.chr5.2285 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr5.2472 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
fragaria_mandshurica_evm.model.chr5.3054 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr5.3055 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
fragaria_mandshurica_evm.model.chr5.3058 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr6.1163 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr6.1201 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
fragaria_mandshurica_evm.model.chr6.1203 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
fragaria_mandshurica_evm.model.chr6.1660 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
fragaria_mandshurica_evm.model.chr6.1663 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
fragaria_mandshurica_evm.model.chr6.2611 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr6.3327 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr6.3579 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr6.3580 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr6.3581 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr6.3806 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr6.807 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
fragaria_mandshurica_evm.model.chr6.808 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
fragaria_mandshurica_evm.model.chr7.1211 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr7.1764 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr7.1787 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
fragaria_mandshurica_evm.model.chr7.1896 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr7.2323 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
fragaria_mandshurica_evm.model.chr7.426 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH