PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.340 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr1.1686 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr1.1848 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr1.1849 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr1.1850 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr1.1852 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr1.1853 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr1.2474 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr2.1257 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr2.1393 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.266 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr2.267 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr2.268 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr2.3203 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr2.3368 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.611 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.612 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.615 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.616 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.617 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.618 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.619 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr2.622 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr2.825 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.1299 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.1300 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.139 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.2032 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr3.257 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr3.259 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.2872 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.2933 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.2935 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.2945 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.2960 Phenylpropanoid CAD medium borderline
fragaria_mandshurica_evm.model.chr3.3015 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr3.3696 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr4.2859 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr5.2417 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr5.903 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr5.939 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr6.1121 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr6.2020 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr6.2040 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr6.3611 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr6.3612 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr6.3613_evm.model.chr6.3614 Phenylpropanoid CAD medium pass
fragaria_mandshurica_evm.model.chr6.3868 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr6.3870 Phenylpropanoid CAD low borderline
fragaria_mandshurica_evm.model.chr6.4440 Phenylpropanoid CAD low borderline