PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr1.1374 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr1.1436 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr2.1265 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr2.1266 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr2.1758 Steroid BR6OX1/CYP85A1 low borderline
fragaria_mandshurica_evm.model.chr2.2187 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr2.2600 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr2.2602 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr2.3328 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr2.348 Steroid BR6OX1/CYP85A1 low borderline
fragaria_mandshurica_evm.model.chr2.3482 Steroid BR6OX1/CYP85A1 low borderline
fragaria_mandshurica_evm.model.chr2.356 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr3.1021 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr3.2568 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr3.2755 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr4.1978 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr4.2155 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr4.2343 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr6.2255 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr6.2403 Steroid BR6OX1/CYP85A1 medium pass
fragaria_mandshurica_evm.model.chr6.532 Steroid BR6OX1/CYP85A1 low borderline
fragaria_mandshurica_evm.model.chr7.402 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr7.403 Steroid BR6OX1/CYP85A1 medium borderline
fragaria_mandshurica_evm.model.chr0.1122 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr0.215 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr0.407 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr0.41 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr0.712 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr0.722 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr1.908 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr2.1726 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr2.2768 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr2.2777 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr2.2779 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr3.1022 Steroid BR6OX2/CYP85A2 medium pass
fragaria_mandshurica_evm.model.chr3.1392_evm.model.chr3.1393 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr3.1396 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr3.2228 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr3.2337 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr3.2470 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr3.2659 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr3.3192 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr4.111 Steroid BR6OX2/CYP85A2 medium borderline
fragaria_mandshurica_evm.model.chr4.1455 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr4.1498 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr4.2294 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr4.2462 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr4.3092 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.107 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.1189 Steroid BR6OX2/CYP85A2 low borderline