PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr5.1224 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.1412 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.167 Steroid BR6OX2/CYP85A2 medium borderline
fragaria_mandshurica_evm.model.chr5.2514 Steroid BR6OX2/CYP85A2 medium borderline
fragaria_mandshurica_evm.model.chr5.260 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.2612 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.2613 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.2990 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.2991 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr5.53 Steroid BR6OX2/CYP85A2 medium borderline
fragaria_mandshurica_evm.model.chr5.956 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr6.1255 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr6.2619 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr6.2858 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr7.1006 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr7.1007 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr7.1237 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr7.289 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr7.291 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr7.694 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr7.742 Steroid BR6OX2/CYP85A2 low borderline
fragaria_mandshurica_evm.model.chr0.340 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr0.589 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr0.794 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr0.797 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr2.1761 Steroid CAS low borderline
fragaria_mandshurica_evm.model.chr2.1829 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr3.1296 Steroid CAS low borderline
fragaria_mandshurica_evm.model.chr3.1297 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr3.1298 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr3.1299 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr3.1300 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr3.1859 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr3.2935 Steroid CAS low borderline
fragaria_mandshurica_evm.model.chr3.2945 Steroid CAS low borderline
fragaria_mandshurica_evm.model.chr3.3015 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr4.542 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr4.543 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr4.675 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr4.677 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr5.1127 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr5.2417 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr5.2512 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr5.2513 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr6.1121 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr6.2020 Steroid CAS low borderline
fragaria_mandshurica_evm.model.chr6.2040 Steroid CAS low borderline
fragaria_mandshurica_evm.model.chr6.304 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr6.305_evm.model.chr6.306 Steroid CAS medium pass
fragaria_mandshurica_evm.model.chr6.3156 Steroid CAS medium pass