PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
Reset
Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.590 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.591 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.906 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.907 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.1155 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.1159 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.1160 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2106 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2107 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2128 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2129 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2152 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr1.2154 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.2206 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.3145 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr2.3390 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.487 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.913 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr3.1921 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr3.950 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1188 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1189 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1405 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1668 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2273 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2274 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2336 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2337 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr5.209 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr5.2144 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr5.434 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr5.475 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr5.752 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr6.1329 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr6.3628 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr6.453 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr6.455 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr6.456 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr7.2827 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr7.486.1 Phenylpropanoid 4CL low borderline
fragaria_mandshurica_evm.model.chr7.735 Phenylpropanoid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.1122 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr0.1288 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr0.215 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr0.407 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr0.41 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr0.712 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr0.722 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr0.843 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr0.864 Phenylpropanoid C3'H/CYP98A low borderline