PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.671 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr1.1229 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr1.2200 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr1.524 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr1.625 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr2.1003 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr2.1094 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr2.3153 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr2.3353 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr3.2534 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr3.3219 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr3.3577 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr3.613 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr3.615 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr4.1213 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr5.1504 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr5.2006 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr5.2233 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr5.2626 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr6.1438 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr6.2250 Rosmarinic Acid RAS low borderline
fragaria_mandshurica_evm.model.chr6.411 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr7.1859 Rosmarinic Acid RAS medium pass
fragaria_mandshurica_evm.model.chr7.288 Rosmarinic Acid RAS low borderline