PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.1122 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr0.1211 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr0.215 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr0.216 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr0.40 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr0.407 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr0.41 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr1.1677 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr1.1679 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr1.2145 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr1.2466 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr1.2467 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr1.2674 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr1.908 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr1.909 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr2.1265 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr2.1266 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr2.2600 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr2.2602 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr2.2768 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr2.2771 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr2.2777 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr2.2779 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr2.3016 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr2.3362 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr2.3473 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr2.494 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr2.594 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr2.675 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr3.1395 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr3.2228 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr3.2337 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr3.2470 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr3.2716 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr3.2916 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr3.2932 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr3.3183 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr3.3192 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr3.858 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr4.1455 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr4.1463 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr4.1498 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr4.1930 Terpenoid CYP76 low borderline
fragaria_mandshurica_evm.model.chr4.1978 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr4.1979 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr4.2012 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr4.2295 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr4.2319 Terpenoid CYP76 medium pass
fragaria_mandshurica_evm.model.chr4.2320 Terpenoid CYP76 medium borderline
fragaria_mandshurica_evm.model.chr4.2323 Terpenoid CYP76 medium pass