Fragaria mandshurica (fragaria_mandshurica)
Imported from atlas release summary for Fragaria mandshurica.
1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1321
Candidate Genes
BAHD
6.6%
C4H
5.73%
C3'H/CYP98A
4.9%
UGT
4.5%
4CL
4.1%
7DLGT
3.93%
POD
3.77%
UFGT
3.67%
Other Families
62.81%
More Families (96)
IFS
103
3.43%
CYP76
102
3.4%
T3O
92
3.07%
F3H
88
2.93%
NMT
84
2.8%
F3'H/CYP75B
55
1.83%
CAD
55
1.83%
STR
54
1.8%
H6H
52
1.73%
DWF4/CYP90B1
52
1.73%
CODM/T6ODM
49
1.63%
BR6OX2/CYP85A2
48
1.6%
LAC
47
1.57%
SMT1/SMT2/SMT3
45
1.5%
CSE
44
1.47%
GS
39
1.3%
TRI/TRII
38
1.27%
CAS
38
1.27%
IFR
32
1.07%
SGD
28
0.93%
CYP90D1
28
0.93%
IO
27
0.9%
ANR
27
0.9%
TPS
27
0.9%
COMT
25
0.83%
T16H
24
0.8%
GES
24
0.8%
HCT
24
0.8%
RAS
24
0.8%
CYP71
24
0.8%
PMT
23
0.77%
BR6OX1/CYP85A1
23
0.77%
PYKS
21
0.7%
G8O/G8H
20
0.67%
CCR
20
0.67%
7DLH
19
0.63%
F3'5'H/CYP75A
18
0.6%
LAMT
17
0.57%
F5H/CYP84A
16
0.53%
PAL
15
0.5%
TAT
15
0.5%
COR
14
0.47%
NCS
13
0.43%
SLS
13
0.43%
CPD/CYP90A1
12
0.4%
FNS
11
0.37%
CCoAOMT
11
0.37%
MPO
10
0.33%
16OMT
10
0.33%
DFR
10
0.33%
SQE
10
0.33%
ISY
9
0.3%
8HGO
9
0.3%
ANS/LDOX
9
0.3%
FPPS
9
0.3%
ROT3/CYP90C1
8
0.27%
CNMT
7
0.23%
CHS
7
0.23%
DET2
6
0.2%
CYP51G1
6
0.2%
GGPPS
6
0.2%
AACT
6
0.2%
HMGR
6
0.2%
BBE
5
0.17%
HPPR
5
0.17%
SQS/FDFT1
5
0.17%
6OMT_4OMT_SOMT
4
0.13%
CYP719
4
0.13%
CPR
4
0.13%
TDC
3
0.1%
TYDC_DDC
3
0.1%
ADC
3
0.1%
SMO1/SMO2
3
0.1%
DXS
3
0.1%
MVK
3
0.1%
DXR
3
0.1%
PMK
3
0.1%
IDI
3
0.1%
MVD
3
0.1%
CYP80B1
2
0.07%
CHI
2
0.07%
DWF1
2
0.07%
ODC
1
0.03%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
HDR/IspH
1
0.03%
MCT/IspD
1
0.03%
HDS/IspG
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 387 | 18 | BAHD (153) | View species results |
| Alkaloid pathway | 304 | 22 | NMT (45) | View species results |
| Phenylpropanoid pathway | 284 | 11 | POD (104) | View species results |
| Flavonoid pathway | 165 | 11 | UFGT (101) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (34) | View species results |
| Steroid pathway | 85 | 13 | CAS (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1016 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 246 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_mandshurica_evm.model.chr1.507 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr2.2133 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| fragaria_mandshurica_evm.model.chr2.2169 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr2.555 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr4.1635 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| fragaria_mandshurica_evm.model.chr4.1637 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| fragaria_mandshurica_evm.model.chr4.3048 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr5.1773 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr5.1916 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr6.1669 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr6.1670 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| fragaria_mandshurica_evm.model.chr7.2843 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| fragaria_mandshurica_evm.model.chr7.2844 | Alkaloid | NCS | medium | pass | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |