PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.1288 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr0.395 Alkaloid T3O low borderline
fragaria_mandshurica_evm.model.chr0.843 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr1.1336 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr1.1374 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr1.1436 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr1.1677 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr1.2466 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr1.2467 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr1.2700 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr1.908 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.1181 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr2.1265 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.1266 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.1726 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr2.2768 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.2771 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.2777 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.2779 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.2854 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr2.3016 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr2.3362 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr2.356 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr2.592 Alkaloid T3O low borderline
fragaria_mandshurica_evm.model.chr2.675 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr3.1021 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr3.1022 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr3.1301 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr3.2228 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr3.2568 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr3.2755 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr3.2832 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr3.2916 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr3.2932 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.111 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr4.1455 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.1498 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.1993 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.2012 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.2073 Alkaloid T3O low borderline
fragaria_mandshurica_evm.model.chr4.2155 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr4.2319 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.2320 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.2324 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.2325 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr4.2567 Alkaloid T3O low borderline
fragaria_mandshurica_evm.model.chr4.3092 Alkaloid T3O low borderline
fragaria_mandshurica_evm.model.chr4.808 Alkaloid T3O medium pass
fragaria_mandshurica_evm.model.chr5.107 Alkaloid T3O medium borderline
fragaria_mandshurica_evm.model.chr5.1076 Alkaloid T3O low borderline