PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.590 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.591 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.906 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.907 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.1155 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.1159 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.1160 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2106 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2107 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2128 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2129 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr1.2152 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr1.2154 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.2206 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.3145 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr2.3390 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.487 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr2.913 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr3.1921 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr3.950 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1188 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1189 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1405 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr4.1668 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2273 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2274 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2336 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr4.2337 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr5.209 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr5.2144 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr5.434 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr5.475 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr5.752 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr6.1329 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr6.3628 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr6.453 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr6.455 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr6.456 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr7.2827 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr7.486.1 Rosmarinic Acid 4CL low borderline
fragaria_mandshurica_evm.model.chr7.735 Rosmarinic Acid 4CL medium pass
fragaria_mandshurica_evm.model.chr0.1122 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr0.1210 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr0.1211 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr0.1288 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr0.215 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr0.216 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr0.40 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr0.407 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr0.41 Rosmarinic Acid C4H medium pass