PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.843 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.1336 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.1374 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.1436 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.1489 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.1677 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr1.1679 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.2466 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr1.2467 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr1.2674 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.2700 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.2746 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.908 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr1.909 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.1265 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.1266 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.1758 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.2600 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.2602 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.2768 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr2.2769 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.2771 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr2.2777 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.2779 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr2.2854 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.3016 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr2.3362 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.3482 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.356 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.675 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr2.679 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr2.873 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.1301 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr3.1392_evm.model.chr3.1393 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.1394 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.1396 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2228 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2337 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2470 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2568 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2716 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2747 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2832 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2916 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.2932 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.3192 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr3.3349 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.3356 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr3.858 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.111 Rosmarinic Acid C4H low borderline