PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr4.1455 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.1463 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.1498 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.1978 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.1979 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.1993 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.2012 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.2294 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2295 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2319 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.2320 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.2323 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2324 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.2325 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2343 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2360 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2361 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2421 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2462 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.2567 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.3092 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.483 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr4.556 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.557 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.692 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.808 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.107 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.1076 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.1189 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.1224 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.1263 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.1336 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.1412 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.1670 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.1705 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.1937 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.2426 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.2514 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.2516 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.256 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.2612 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.2613 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.2990 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.2991 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.3104 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.53 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.677 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr5.678 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.736 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr5.956 Rosmarinic Acid C4H low borderline