PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr6.1565 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.1575 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.1970 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.2255 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.2274 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.2403 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr6.2404 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.2619 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.2858 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.3073 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.3381 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr6.3542 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.3610 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.4604 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.4692 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.725 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.897 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr6.98 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.1179 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.1187 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.1237 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.1650 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr7.1819 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.1990 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.2030 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.2132 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.2483 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.289 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.291 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.292 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.402 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.403 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.405 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.694 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.742 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr7.743 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.801_evm.model.chr7.802 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.841 Rosmarinic Acid C4H low borderline
fragaria_mandshurica_evm.model.chr7.842 Rosmarinic Acid C4H medium pass
fragaria_mandshurica_evm.model.chr4.653 Rosmarinic Acid CPR medium pass
fragaria_mandshurica_evm.model.chr5.2627 Rosmarinic Acid CPR medium pass
fragaria_mandshurica_evm.model.chr6.1089 Rosmarinic Acid CPR medium pass
fragaria_mandshurica_evm.model.chr6.3973 Rosmarinic Acid CPR low borderline
fragaria_mandshurica_evm.model.chr1.2701 Rosmarinic Acid HPPR medium pass
fragaria_mandshurica_evm.model.chr1.2702 Rosmarinic Acid HPPR medium pass
fragaria_mandshurica_evm.model.chr6.2860 Rosmarinic Acid HPPR medium pass
fragaria_mandshurica_evm.model.chr7.786 Rosmarinic Acid HPPR medium pass
fragaria_mandshurica_evm.model.chr7.787 Rosmarinic Acid HPPR medium pass
fragaria_mandshurica_evm.model.chr0.922 Rosmarinic Acid PAL high pass
fragaria_mandshurica_evm.model.chr0.923 Rosmarinic Acid PAL medium pass