PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr1.1686 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr1.1848 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr1.1849 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr1.1850 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr1.1852 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr1.1853 Alkaloid GS medium pass
fragaria_mandshurica_evm.model.chr1.2474 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr1.2599 Alkaloid GS medium pass
fragaria_mandshurica_evm.model.chr2.1254 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr2.1255 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr2.1256 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr2.1257 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr2.266 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr2.267 Alkaloid GS medium pass
fragaria_mandshurica_evm.model.chr2.268 Alkaloid GS medium pass
fragaria_mandshurica_evm.model.chr2.3203 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr3.1040 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr3.1648 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr3.1737 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr3.2376 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr3.2753 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr3.3696 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr3.380 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr3.382 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr4.2859 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr5.903 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr6.3611 Alkaloid GS medium pass
fragaria_mandshurica_evm.model.chr6.3612 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr6.3613_evm.model.chr6.3614 Alkaloid GS high pass
fragaria_mandshurica_evm.model.chr6.4440 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr6.4441 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr6.4507 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr6.4508 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr7.2026 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr7.2126 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr7.2196_evm.model.chr7.2197 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr7.2400 Alkaloid GS low borderline
fragaria_mandshurica_evm.model.chr7.2401 Alkaloid GS medium pass
fragaria_mandshurica_evm.model.chr7.475 Alkaloid GS high pass