PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr1.2200 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr1.525 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr1.869 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr2.1003 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr2.1094 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr2.2558 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr2.3131 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr2.3132 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr2.3153 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr3.2534 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr3.3219 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr3.3577 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr3.613 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr3.615 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr4.1421 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr5.2006 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr5.536 Alkaloid PMT medium borderline
fragaria_mandshurica_evm.model.chr6.1438 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr6.410 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr6.411 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr6.4730 Alkaloid PMT medium pass
fragaria_mandshurica_evm.model.chr7.1859 Alkaloid PMT low borderline
fragaria_mandshurica_evm.model.chr7.2667 Alkaloid PMT medium borderline